Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O16
         (437 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   2.9  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   3.9  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   6.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   6.8  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   6.8  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    20   9.0  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 133 PNTIGSRNGTGICPCICRLAXRDVEI 56
           PN I   NGTG+     RLA  D+ +
Sbjct: 161 PNNIILGNGTGVQLVPTRLANGDIAL 186


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 76  QGDKCTDIFLCRFSNL 123
           +GD C D+  C  S L
Sbjct: 55  EGDNCRDVIQCTSSGL 70


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 128 YNRFEKRHRNMSVHLSPCXQGRGDW*YCNDRRMQTFGQNK 9
           +NR+  R R + +  + C   R    +  +RRM+   +NK
Sbjct: 263 FNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 302


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 90  AFVALLXGTWR 58
           AF+ALL  TWR
Sbjct: 657 AFLALLVKTWR 667


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 90  AFVALLXGTWR 58
           AF+ALL  TWR
Sbjct: 657 AFLALLVKTWR 667


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 128 YNRFEKRHRNMSVHLSPCXQGRGDW*YCNDRRMQTFGQNK 9
           +NR+  R R + +  + C   R    +  +RRM+   +NK
Sbjct: 265 FNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 304


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 406 LLDNEKKQFI 435
           LLD+EKK FI
Sbjct: 275 LLDSEKKNFI 284


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,132
Number of Sequences: 336
Number of extensions: 2204
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)