Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_O16
(437 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 154 6e-39
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 154 6e-39
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c... 26 2.9
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 25 5.1
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.1
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 25 5.1
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch... 25 5.1
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 24 8.9
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 154 bits (373), Expect = 6e-39
Identities = 71/121 (58%), Positives = 92/121 (76%), Gaps = 1/121 (0%)
Frame = -1
Query: 416 LSSKMADQTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPF 237
+++++ Q+E+AFQKQ +F N K G R R +K+VGLGFKTP EAI G Y+DKKCPF
Sbjct: 1 MATELVVQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPF 57
Query: 236 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCXQ-GRG 60
G VSIRGRILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP + G
Sbjct: 58 VGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFRINEG 117
Query: 59 D 57
D
Sbjct: 118 D 118
Score = 32.7 bits (71), Expect = 0.025
Identities = 11/15 (73%), Positives = 15/15 (100%)
Frame = -2
Query: 55 GDIVTIGECRPLAKT 11
GD+VT+G+CRPL+KT
Sbjct: 117 GDVVTVGQCRPLSKT 131
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 154 bits (373), Expect = 6e-39
Identities = 71/121 (58%), Positives = 92/121 (76%), Gaps = 1/121 (0%)
Frame = -1
Query: 416 LSSKMADQTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPF 237
+++++ Q+E+AFQKQ +F N K G R R +K+VGLGFKTP EAI G Y+DKKCPF
Sbjct: 1 MATELVVQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPF 57
Query: 236 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCXQ-GRG 60
G VSIRGRILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP + G
Sbjct: 58 VGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFRINEG 117
Query: 59 D 57
D
Sbjct: 118 D 118
Score = 32.7 bits (71), Expect = 0.025
Identities = 11/15 (73%), Positives = 15/15 (100%)
Frame = -2
Query: 55 GDIVTIGECRPLAKT 11
GD+VT+G+CRPL+KT
Sbjct: 117 GDVVTVGQCRPLSKT 131
>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 169
Score = 25.8 bits (54), Expect = 2.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 141 VKVIAADHDSSLHLHFLNDAGEDAAADRNVTSEGTL 248
V + HDS+LH +FLN +D + T+E L
Sbjct: 24 VLAFSEHHDSALHSYFLNARVKDVILESLRTTEEKL 59
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 25.0 bits (52), Expect = 5.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 326 PSSSCHLSCSGKRWPVSETLSLSDPPFCLTMKKSNSF 436
PS S S K V E+L+ PPFC++ K N F
Sbjct: 113 PSFSIQAYSSYKDNVVVESLANLLPPFCISQKIVNLF 149
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 25.0 bits (52), Expect = 5.1
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 159 DHDSSLHL--HFLNDAGEDAAADRNVTSEGTLLVNVGT 266
+H +H+ H L D + + DRN +EGT N T
Sbjct: 128 NHKLEIHVYKHILPDLPQSSEVDRNSETEGTREENSNT 165
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 5.1
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 263 YPQSPLWEF*SLNQHSYGDACPSSSCHLSCSGK 361
YP W+ +++ CPS S HL+ S K
Sbjct: 299 YPSQEAWDMRLTIENTLAIKCPSISTHLAGSKK 331
>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 5.1
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -1
Query: 380 FQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEG-TYIDKKCPFTGNVSIRGRIL 204
+ K T F N+ G K M K G+ A G T+ID P I G+I+
Sbjct: 163 YHKHVTAF-NKAGEEKMGVMDELKKRGMKSLNEIFAEAGATFIDPPNPNVNFTQIDGKIV 221
Query: 203 TGV 195
TGV
Sbjct: 222 TGV 224
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 24.2 bits (50), Expect = 8.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -1
Query: 350 RKGGMKRKDMRHHKNVGLGFKTPREAIEG 264
R G D++ +N+G+ F+TP + G
Sbjct: 194 RPGDHNSTDLKFAENIGIKFETPEQFFLG 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,816,002
Number of Sequences: 5004
Number of extensions: 35517
Number of successful extensions: 113
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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