Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O16
         (437 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             171   3e-43
SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)                   32   0.18 
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         28   2.9  
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         27   5.1  
SB_48734| Best HMM Match : DUF237 (HMM E-Value=5.2)                    27   6.8  
SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28)             27   8.9  
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         27   8.9  
SB_50252| Best HMM Match : SAM_1 (HMM E-Value=0.00064)                 27   8.9  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  171 bits (415), Expect = 3e-43
 Identities = 83/126 (65%), Positives = 99/126 (78%), Gaps = 16/126 (12%)
 Frame = -1

Query: 404 MADQTEKAFQKQATVFLNRKGGM----KRKDMRHHKNVGLGFKTP------------REA 273
           MA+QTE+A+QKQA +F NRK  +    K+KD+R  +NVGLGFKTP            REA
Sbjct: 1   MAEQTERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREA 60

Query: 272 IEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMS 93
           IEGTYIDKKCPFTGNVSIRGRILTG+ + MKM+RTI+IRRDYLHY+ KYNRFEKRH+N++
Sbjct: 61  IEGTYIDKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYLHYIKKYNRFEKRHKNLA 120

Query: 92  VHLSPC 75
            H SPC
Sbjct: 121 AHCSPC 126



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = -2

Query: 85  CRLAXRDVEIGDIVTIGECRPLAKT 11
           C    RD+ +GD++T+G+CRPL+KT
Sbjct: 123 CSPCFRDIALGDLITVGQCRPLSKT 147


>SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)
          Length = 332

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -1

Query: 230 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCXQGRGDW* 51
           N++IR   +   + +  +Q  +  R DY+  +  ++   K HR++S  +     G  DW 
Sbjct: 148 NIAIRAVGIGKEIDERALQTLVSNRNDYIFRVGSFDALSKLHRSLSQSICG-TVGAPDWL 206

Query: 50  YC 45
           YC
Sbjct: 207 YC 208


>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 254 QCRYPQSPLWEF*SLNQHSYGDACP 328
           +C   QS LWE  SL QH Y +  P
Sbjct: 505 KCNALQSSLWELKSLQQHYYPEVSP 529


>SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2429

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 320 ACPSSSCHLSCSGKRWPVSETLSLSDPPFCLTMKKSNS 433
           AC SSSC  +C    + +S  LS    P+  T+K SN+
Sbjct: 812 ACRSSSCTCAC----YHISSPLSSQTKPWLFTLKPSNA 845


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -1

Query: 386 KAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKK-CPFTGNVSIRGR 210
           +A   + T  ++RK   K+K+ +  KN+    K PR     T++  +     G V++R R
Sbjct: 216 QALAMKVTSRVSRKIDSKKKNKQRRKNLRALRKAPRRPAPVTHLSARGADVDGAVALRAR 275

Query: 209 ILTGVVQK 186
              G  Q+
Sbjct: 276 ARAGNAQR 283


>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +2

Query: 299 NQHSYGDACPSSSCHLS---CSGKRWPVSETLSLSDPPFC 409
           N HS  D CP+S C+L    C   +  ++ TL     P C
Sbjct: 33  NDHSDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDC 72


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +2

Query: 299  NQHSYGDACPSSSCHLS---CSGKRWPVSETLSLSDPPFC 409
            N HS  D CP+S C+L    C   +  ++ TL     P C
Sbjct: 1330 NDHSDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDC 1369


>SB_48734| Best HMM Match : DUF237 (HMM E-Value=5.2)
          Length = 407

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 317 DACPSSSCHLSCSGKRWPVSETLSLSDPPFCLTMKKSNS 433
           D C    C + C  K    +   SL+D  FCL M +  S
Sbjct: 355 DCCGIGLCEIKCPYKHRNTTIAESLNDKGFCLHMTEHGS 393


>SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28)
          Length = 552

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -1

Query: 182 KMQRTIVIRRDYL-HYLPKYNRFEKRHRNMSVHLSPCXQGRGDW*YCNDRRMQTFGQNK 9
           ++Q TI  ++  L + LP YN +       ++ LS C Q R +  Y    R   F   +
Sbjct: 97  RLQGTISQQQQELDNLLPSYNEYRAEEEQCTLRLSACEQRRTEL-YAKQGRKNQFSSKE 154


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 55 GDIVTIGECRPLAK 14
          GD+V I ECRPL+K
Sbjct: 29 GDVVRIKECRPLSK 42


>SB_50252| Best HMM Match : SAM_1 (HMM E-Value=0.00064)
          Length = 285

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 147 VIAADHDSSLHLHFLNDAGEDAAADRNVTSEGTLLVNVGT 266
           V+  DH+ ++ + F+ D+G D    R+   E   L  +GT
Sbjct: 184 VLPPDHNQTVQVKFMVDSGSDVTTLRHDVIERLGLPRIGT 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,997,033
Number of Sequences: 59808
Number of extensions: 285273
Number of successful extensions: 698
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)