Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_O16
(437 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73426-1|CAA97792.1| 155|Caenorhabditis elegans Hypothetical pr... 152 1e-37
Z69883-3|CAA93741.2| 450|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 28 2.6
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 28 2.6
Z83237-1|CAB05786.2| 423|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 27 6.0
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 27 6.0
Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical pr... 27 7.9
U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein. 27 7.9
>Z73426-1|CAA97792.1| 155|Caenorhabditis elegans Hypothetical
protein F40F11.1 protein.
Length = 155
Score = 152 bits (368), Expect = 1e-37
Identities = 71/112 (63%), Positives = 86/112 (76%), Gaps = 3/112 (2%)
Frame = -1
Query: 404 MADQTEKAFQKQATVFLNRKGGM---KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFT 234
M++QTE+AF KQ TV LN K + +K R+ + VGLGFK PR+A+EGTYIDKKCP+
Sbjct: 1 MSEQTERAFLKQPTVNLNNKARILAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWA 60
Query: 233 GNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSP 78
GNV IRG ILTGVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+ H SP
Sbjct: 61 GNVPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSP 112
Score = 43.2 bits (97), Expect = 8e-05
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = -2
Query: 94 PCICRLAXRDVEIGDIVTIGECRPLAKT 11
P C A RD+ GD+VTIGECRPL+KT
Sbjct: 107 PAHCSPAFRDIHPGDLVTIGECRPLSKT 134
>Z69883-3|CAA93741.2| 450|Caenorhabditis elegans Hypothetical
protein C27C12.4 protein.
Length = 450
Score = 29.1 bits (62), Expect = 1.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 192 SENEDAENYRDPPRLPSLPTQIQ*VRETAQEYVRAFVALL 73
S+NED E+ DP LP + + E +R+ +ALL
Sbjct: 199 SQNEDIESSEDPLILPETENDVTLPASSVSEQLRSTIALL 238
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 28.3 bits (60), Expect = 2.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 332 SSCHLSCSGKRWPVSETLSLSD 397
+SC++ CSG++W E S S+
Sbjct: 1011 ASCYIDCSGRKWNYGEWTSCSE 1032
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 28.3 bits (60), Expect = 2.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 332 SSCHLSCSGKRWPVSETLSLSD 397
+SC++ CSG++W E S S+
Sbjct: 1011 ASCYIDCSGRKWNYGEWTSCSE 1032
>Z83237-1|CAB05786.2| 423|Caenorhabditis elegans Hypothetical
protein R06B9.1 protein.
Length = 423
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 320 ACPSSSCHLSCSGKRWPVSETLSLSDPP 403
AC S LS WP S TL L+ PP
Sbjct: 92 ACKDGSNELSAGDYVWPFSYTLPLNVPP 119
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 181 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 86
+C + + AA T TT I +NG +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 181 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 86
+C + + AA T TT I +NG +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
cell adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 181 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 86
+C + + AA T TT I +NG +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595
>Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical
protein F29D10.4 protein.
Length = 1100
Score = 26.6 bits (56), Expect = 7.9
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 194 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCXQG 66
V+ + ++ I +RR Y +++F +R+ +S PC QG
Sbjct: 605 VEYLGLRENIRVRRAGFAYRRAFDKFAQRYAIVSPQTWPCFQG 647
>U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.
Length = 1036
Score = 26.6 bits (56), Expect = 7.9
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 194 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCXQG 66
V+ + ++ I +RR Y +++F +R+ +S PC QG
Sbjct: 542 VEYLGLRENIRVRRAGFAYRRAFDKFAQRYAIVSPQTWPCFQG 584
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,295,537
Number of Sequences: 27780
Number of extensions: 208124
Number of successful extensions: 589
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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