Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_O16
(437 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo... 158 2e-39
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A) 155 9e-39
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C) 151 2e-37
At4g35720.1 68417.m05069 expressed protein contains Pfam profile... 31 0.45
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si... 30 0.59
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si... 29 1.4
At4g26980.1 68417.m03882 expressed protein 27 4.2
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit... 27 4.2
At5g50640.1 68418.m06274 CBS domain-containing protein / octicos... 27 7.3
At5g50530.1 68418.m06258 CBS domain-containing protein / octicos... 27 7.3
At1g80180.1 68414.m09384 expressed protein 26 9.7
At1g65860.1 68414.m07473 flavin-containing monooxygenase family ... 26 9.7
>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
Length = 159
Score = 158 bits (383), Expect = 2e-39
Identities = 75/115 (65%), Positives = 87/115 (75%), Gaps = 5/115 (4%)
Frame = -1
Query: 404 MADQTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCP 240
MA+QTEKAF KQ VFL+ K K K R KN+GLGFKTPREAIEGTYID+KCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60
Query: 239 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPC 75
FTG VSIRGRIL+G KMQRTI++RRDYLH++ KY R+EKRH N+ H+SPC
Sbjct: 61 FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPC 115
Score = 31.5 bits (68), Expect = 0.26
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = -2
Query: 64 VEIGDIVTIGECRPLAKT 11
V+ GD VTIG+CRPL+KT
Sbjct: 118 VKEGDRVTIGQCRPLSKT 135
>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
Length = 160
Score = 155 bits (377), Expect = 9e-39
Identities = 73/115 (63%), Positives = 85/115 (73%), Gaps = 5/115 (4%)
Frame = -1
Query: 404 MADQTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCP 240
MA+QTEKAF KQ VFL+ K K K R KN+GLGFKTPREAI+G Y+DKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60
Query: 239 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPC 75
FTG VSIRGRIL G KMQRTI++RRDYLH++ KY R+EKRH N+ H+SPC
Sbjct: 61 FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPC 115
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -2
Query: 64 VEIGDIVTIGECRPLAKT 11
V+ GD + IG+CRPL+KT
Sbjct: 118 VKEGDHIIIGQCRPLSKT 135
>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
Length = 159
Score = 151 bits (367), Expect = 2e-37
Identities = 73/115 (63%), Positives = 85/115 (73%), Gaps = 5/115 (4%)
Frame = -1
Query: 404 MADQTEKAFQKQATVFLNRK--GGMKRKDM---RHHKNVGLGFKTPREAIEGTYIDKKCP 240
MA+QTEKAF KQ VFL+ K G KR R KN+GLGFKTPREAI+G YID KCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60
Query: 239 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPC 75
FTG VSIRGRIL G KMQRTI++RR+YLH++ KY R+EKRH N+ H+SPC
Sbjct: 61 FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPC 115
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -2
Query: 64 VEIGDIVTIGECRPLAKT 11
V+ GD V IG+CRPL+KT
Sbjct: 118 VKEGDHVIIGQCRPLSKT 135
>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
PF03087: Arabidopsis protein of unknown function
Length = 325
Score = 30.7 bits (66), Expect = 0.45
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -1
Query: 359 FLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 231
FL+ G+K K+ HHK G+ K ++ IE + +K+ TG
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKRDYETG 245
>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GI:1620985 from
[Nicotiana plumbaginifolia]
Length = 116
Score = 30.3 bits (65), Expect = 0.59
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 200 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVH 87
G V KMQ+++V+ D L + YNR+ KR H
Sbjct: 6 GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAH 43
>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GB:Y08858 from
[Nicotiana plumbaginifolia]
Length = 105
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 212 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVH 87
+ + G V KMQ ++V+ D L + YNR+ KR H
Sbjct: 2 KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAH 43
>At4g26980.1 68417.m03882 expressed protein
Length = 343
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 290 KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 186
+ PREA+ +D+ PF ++ + ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274
>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 206
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -1
Query: 215 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 99
G+++ GVV+ +R + + R + L NRF RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206
>At5g50640.1 68418.m06274 CBS domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing
protein contains Pfam profiles: PF00571 CBS domain,
PF00564: PB1 domain
Length = 548
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 402 GGSDRESVSETGHRFPEQERWHEEEG 325
GG R+S+S +GH F +++ E EG
Sbjct: 5 GGPSRKSLSFSGHSFQGRKKASENEG 30
>At5g50530.1 68418.m06258 CBS domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing
protein contains Pfam profiles: PF00571 CBS domain,
PF00564: PB1 domain
Length = 548
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 402 GGSDRESVSETGHRFPEQERWHEEEG 325
GG R+S+S +GH F +++ E EG
Sbjct: 5 GGPSRKSLSFSGHSFQGRKKASENEG 30
>At1g80180.1 68414.m09384 expressed protein
Length = 138
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Frame = -1
Query: 416 LSSKMADQTEKAFQKQATVFLNRKGGMKRK------DMRHHKNVG 300
++S++ DQT K + + GGM+R +RHH+N G
Sbjct: 51 ITSEVQDQTTKPIAGEGLKPIRTDGGMERSRSNGGGAIRHHRNTG 95
>At1g65860.1 68414.m07473 flavin-containing monooxygenase family
protein / FMO family protein similar to
flavin-containing monooxygenase FMO3 (dimethylaniline
monoxygenase (N-oxide forming) 3) GI:349533 [SP|P32417]
from Oryctolagus cuniculus, [SP|P97501] from Mus
musculus; contains Pfam profile PF00743 Flavin-binding
monooxygenase-like domain
Length = 459
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 354 EQERWHEEEGHASP*ECWFRLQNSQRG 274
E W EE H SP E W R+Q +RG
Sbjct: 390 EYLNWIAEECHCSPVENW-RIQEVERG 415
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,738,874
Number of Sequences: 28952
Number of extensions: 195494
Number of successful extensions: 451
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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