Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O15
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    31   0.16 
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    29   0.66 
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    27   1.5  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    27   2.0  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    26   3.5  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    26   3.5  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   8.1  

>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -2

Query: 419 ELTPTQVKDQPSVTFEAEADAFYTLVFTDPDNYDGPELVYREWHHWLVGN 270
           E  P   K       E E D  +  VFTDPD  D    +Y   H WL+G+
Sbjct: 201 EADPNSQKALAKQILEQELDMIHQAVFTDPD--DSSVWIY---HRWLMGH 245


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 372 LKSDRRLILHL-CRSQLISLRRYSTARVFKLN 464
           LK D RL++H  C S  ISL+R     V KL+
Sbjct: 289 LKVDTRLVVHAYCHSDFISLKRIKELEVEKLS 320


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
 Frame = +3

Query: 267 NVSYEPVVPFTVDQLRAXXXXXXXEHERIKSISLGLKSDRRLILH-----LC-RSQLISL 428
           N S  P+ P T DQL A           I+  +L L+S++ ++++     LC R+Q ++ 
Sbjct: 184 NASRSPIAPLTEDQLSAREELPLSHFSHIE-WNLHLRSNKSIVVNNFVGQLCSRTQCMTC 242

Query: 429 RRYSTARVFKLNVLSWSDGNDIRHYFASFECL 524
            R ST      ++    D  D+ H  +  ECL
Sbjct: 243 GRTSTTFAPFTSLAIPID--DVSHVVSLQECL 272


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 494  DVIPVAPTKNIELKYPSGAIASQGNELTPTQVK 396
            D+I    TK +E+ +P GA       LTP  VK
Sbjct: 994  DLISKGATKPLEIAFPDGASILVAFRLTPVPVK 1026


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -2

Query: 530 VAQAFEASKIVPDV-IPVAPTKNIELKYPSGAIASQGNELTPTQVKDQPSVTFEAEADAF 354
           VAQ   +  + PD  + VA  +N EL++      S GNELT       P  T +   + +
Sbjct: 332 VAQHITSLAVHPDGNLFVAGLENGELRFFE---TSSGNELTKFGPHSSPVKTLQFGENGY 388

Query: 353 YTLVFTDPDN 324
           + +V T+ D+
Sbjct: 389 WLVVTTNDDS 398


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
 Frame = -2

Query: 290 HHWLVGNIPGGDLSAGETL--SGYIGSGPPQGTGIHRY-VYIL----YKQPGKLDFDEKR 132
           H   V   PG    +G  +   G +G G     G+  Y V  L    YKQP +LD  +  
Sbjct: 303 HPTAVSPFPGAATGSGGEIRDEGAVGQGSLSKAGLAGYSVSDLNIPGYKQPWELDVGKPY 362

Query: 131 LTNTSIDSRASFSTKKFAEKYNLGAPVAGNFYR 33
              TS+D          A     G P    ++R
Sbjct: 363 HIATSLDIMLEAPIGSSAFNNEFGRPCINGYFR 395


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -2

Query: 527 AQAFEASKIVPDVIPVAPTKNIELKYPSGAIASQGNELTPTQVKDQPS 384
           A+  + S +VP     A  K      P+ A+   G    PT  K QP+
Sbjct: 421 AETQDKSTVVPQESATATPKRSPSATPTSALPPIGKFAPPTTAKAQPA 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,312,535
Number of Sequences: 5004
Number of extensions: 46323
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)