Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_O15
(585 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44437| Best HMM Match : PBP (HMM E-Value=2.5e-05) 58 7e-09
SB_52449| Best HMM Match : PBP (HMM E-Value=1.1e-05) 48 7e-06
SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21) 37 0.011
SB_33430| Best HMM Match : RVT_1 (HMM E-Value=1.3e-26) 29 2.1
SB_58995| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_48561| Best HMM Match : AAA (HMM E-Value=0) 29 3.7
SB_22364| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_8338| Best HMM Match : PA (HMM E-Value=5.7e-10) 27 8.5
>SB_44437| Best HMM Match : PBP (HMM E-Value=2.5e-05)
Length = 314
Score = 57.6 bits (133), Expect = 7e-09
Identities = 46/158 (29%), Positives = 73/158 (46%)
Frame = -2
Query: 479 APTKNIELKYPSGAIASQGNELTPTQVKDQPSVTFEAEADAFYTLVFTDPDNYDGPELVY 300
+P N++++Y SGA GN LTP+Q + F D+ + L ++ + LV
Sbjct: 92 SPCVNLDIRYESGAKVHHGNFLTPSQ---HSACGFGV--DSLWILHDSESTQFVHASLV- 145
Query: 299 REWHHWLVGNIPGGDLSAGETLSGYIGSGPPQGTGIHRYVYILYKQPGKLDFDEKRLTNT 120
NI G +S G L Y+ PPQGTG HRY + L +Q +L T
Sbjct: 146 ---------NIQGSRVSNGTVLCEYLPPIPPQGTGFHRYTFCLLRQEQQLK-PYTLPTFR 195
Query: 119 SIDSRASFSTKKFAEKYNLGAPVAGNFYRAQFDDDXPQ 6
S+ R+ ++ ++ + PV F++A +DD Q
Sbjct: 196 SLTDRSISTSALISKVQDRLTPVGLGFFQASWDDSVTQ 233
>SB_52449| Best HMM Match : PBP (HMM E-Value=1.1e-05)
Length = 115
Score = 47.6 bits (108), Expect = 7e-06
Identities = 36/106 (33%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Frame = -2
Query: 335 DPDNYDGPELVYREWHHWLVGNIPGGDL--------------SAGET-LSGYIGSGPPQG 201
DPD YR W H+L NIP +L S +T L Y PP G
Sbjct: 4 DPDAPSPIRHQYRSWLHYLKVNIPSDELAQRLDIQSGMDTIQSGMDTELKSYRPPSPPSG 63
Query: 200 TGIHRYVYILYKQPGKLDFDEKRLTNTSIDSRASFSTKKFAEKYNL 63
+G+HRY Y +Q GK + + I R SF ++FA K+NL
Sbjct: 64 SGLHRYKYYALEQTGK-------VRPSPISERRSFDAQEFAAKHNL 102
>SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)
Length = 1049
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +3
Query: 162 LFIKDVDVTMDPSTLGWSGADVSR*SLSSRKVTTRNVSYEPVVPFT 299
L + +VTM+ S+L W+ A+V S +T R++ ++PVVPF+
Sbjct: 337 LLVHKKNVTMEASSLRWTRANVLSGSHPLAYITARDIDHKPVVPFS 382
>SB_33430| Best HMM Match : RVT_1 (HMM E-Value=1.3e-26)
Length = 288
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = -2
Query: 284 WLVGNIPGGDLSAGETLSGYIGSGPPQGTGIHRYVYILYKQPGKLDFDEKRLTNTSIDSR 105
W N+ GG+L +TLS IG G ++ I D +L +IDS+
Sbjct: 212 WYESNLLGGNLKKYQTLS--IGYGKKANASVNSISRISINNQEIRSADSLKLLGVTIDSQ 269
Query: 104 ASFS 93
+FS
Sbjct: 270 LNFS 273
>SB_58995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = -2
Query: 284 WLVGNIPGGDLSAGETLSGYIGSGPPQGTGIHRYVYILYKQPGKLDFDEKRLTNTSIDSR 105
W N+ GG+L +TLS IG G ++ I D +L +IDS+
Sbjct: 40 WYESNLLGGNLKKYQTLS--IGYGKKANASVNSISRISINNQEIRSADSLKLLGVTIDSQ 97
Query: 104 ASFS 93
+FS
Sbjct: 98 LNFS 101
>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
Length = 2021
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -2
Query: 236 LSGYIGSGPPQGTGIHRYVYILYKQPGKL 150
LS Y G QGTG+ LY QPG L
Sbjct: 212 LSQYSSGGVIQGTGVSPGTSYLYSQPGSL 240
>SB_22364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = +3
Query: 492 IRHYFASFECLCYQRHDYSANLTTI----GRPN 578
++HYF SF C+ R D ++++ I G+PN
Sbjct: 67 VQHYFVSFSIACWLRLDSNSDIQVIFGDTGKPN 99
>SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 716
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 359 AFYTLVFTDPDNYD--GPELVYREWHHWLVGNIPGGDLSAGETLSGYIGS 216
A L++TDP Y G +L + W +PG + G TL+GY G+
Sbjct: 154 AIGALIYTDPKKYAPYGTDLADTFPNTWW---LPGDGVQRGTTLNGYPGA 200
>SB_8338| Best HMM Match : PA (HMM E-Value=5.7e-10)
Length = 326
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 359 AFYTLVFTDPDNYD--GPELVYREWHHWLVGNIPGGDLSAGETLSGYIGS 216
A L++TDP Y G +L + W +PG + G TL+GY G+
Sbjct: 245 AIGALIYTDPKKYAPYGTDLADTFPNTWW---LPGDGVQRGTTLNGYPGA 291
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,796,274
Number of Sequences: 59808
Number of extensions: 366013
Number of successful extensions: 1111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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