Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O14
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07741.1 68415.m00991 ATPase subunit 6, putative similar to A...    44   8e-05
At3g59360.2 68416.m06620 nucleotide-sugar transporter family pro...    28   5.7  
At3g59360.1 68416.m06619 nucleotide-sugar transporter family pro...    28   5.7  

>At2g07741.1 68415.m00991 ATPase subunit 6, putative similar to
           ATPase subunit 6 GI:515963 from [Raphanus sativus];
           contains Pfam profile: PF00119 ATP synthase, A subunit
          Length = 385

 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 26/86 (30%), Positives = 36/86 (41%)
 Frame = -3

Query: 344 PYIFTRTRHXXXXXXXXXXXXXXXXLYG*IKNTNHIFIHIIPQGTPYILIPFXXXXXXXX 165
           PY FT T H                + G  ++  H F  ++P G P  L PF        
Sbjct: 241 PYSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELIS 300

Query: 164 XXIRPGTLAVRLTANIIAGHXLITXL 87
              R  +L +RL AN++AGH L+  L
Sbjct: 301 YCFRALSLGIRLFANMMAGHSLVKIL 326


>At3g59360.2 68416.m06620 nucleotide-sugar transporter family
           protein low similarity to SP|P78382 CMP-sialic acid
           transporter {Homo sapiens}; contains Pfam profile
           PF04142: Nucleotide-sugar transporter
          Length = 405

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +1

Query: 52  ILSNALFVPVLLNXVINXCPAIMLAVNRTAKVPGRIIFLMVSIITINGIKI 204
           +LS + FV    N V+   PA++ A+N   K   ++ F   ++  ++ +K+
Sbjct: 106 LLSVSTFVQAARNNVLLAVPALLYAINNYLKFTMQLYFNPATVKMLSNLKV 156


>At3g59360.1 68416.m06619 nucleotide-sugar transporter family
           protein low similarity to SP|P78382 CMP-sialic acid
           transporter {Homo sapiens}; contains Pfam profile
           PF04142: Nucleotide-sugar transporter
          Length = 405

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +1

Query: 52  ILSNALFVPVLLNXVINXCPAIMLAVNRTAKVPGRIIFLMVSIITINGIKI 204
           +LS + FV    N V+   PA++ A+N   K   ++ F   ++  ++ +K+
Sbjct: 106 LLSVSTFVQAARNNVLLAVPALLYAINNYLKFTMQLYFNPATVKMLSNLKV 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,277,695
Number of Sequences: 28952
Number of extensions: 119498
Number of successful extensions: 233
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)