Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O13
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    26   0.36 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.5  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   4.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.8  

>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = +2

Query: 74  LENYMENYMQYKIMSSIK*IRMKPNCLPSKFDCRADRKRKFTHSE 208
           ++ YM    Q   +     + M+P C+  ++ C   RK K    E
Sbjct: 28  IDMYMRRKCQECRLKKCLTVGMRPECMVPEYQCAVKRKEKKAQKE 72


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/45 (22%), Positives = 19/45 (42%)
 Frame = +2

Query: 74  LENYMENYMQYKIMSSIK*IRMKPNCLPSKFDCRADRKRKFTHSE 208
           ++ YM    Q   +     + M+P C+  ++ C   RK +    E
Sbjct: 231 IDMYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEEKAQKE 275


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 594 TSTRPAWW 617
           TS RPAWW
Sbjct: 23  TSHRPAWW 30


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 366 SNNNIRKNENS*LVSGSSQNG 428
           SNNN   N N+   +G++ NG
Sbjct: 238 SNNNNNNNNNNNNNNGANDNG 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,633
Number of Sequences: 438
Number of extensions: 3774
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)