Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O12
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    26   2.7  
SPBC947.09 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    26   2.7  
SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S...    26   3.6  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   6.3  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   8.3  

>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
 Frame = -1

Query: 349 HNLALEQALKLFHPELPDDMEREILKQFIKSKYDDLRELNDAAN--------ETAIASAV 194
           +N    ++ +    ++PDD E    K+F + K    R+ N A +        +TA+AS  
Sbjct: 224 YNFDSWRSFEYLDKDIPDDGESRDNKRFQEKKNRSERQKNKARDNARLRNLVDTALASDP 283

Query: 193 NVYI-KKMDKATEFKGWWVPTLGIPYIVNLANRSSYHEEAKKA 68
            + + K+ +KA +    W    G       A +    EE + A
Sbjct: 284 RIKLFKEQEKAAKAARKWEREAGAREAAAAAQKKKEEEERRAA 326


>SPBC947.09 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 364 DLVNEHNLALEQALKLFHPELPDDMEREILKQFIKS 257
           D V E    L +ALK ++ E+ DDM  +    FIKS
Sbjct: 192 DRVAEDKSKLMEALKKYNLEVLDDMLNDAGANFIKS 227


>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
           Idi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 227

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 388 DTCCLHPNDLVNEHNLALEQALK 320
           +TCC HP D+  E    L +A++
Sbjct: 84  NTCCSHPLDVAGERGNTLPEAVE 106


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = -1

Query: 373 HPNDLVNEHNLALEQALKLFHPELPDDMEREILKQFIKSKYDDLRELNDAANETAIASAV 194
           HP DLV +++   E   K+    + D    +++ +   ++      LND   ET   S +
Sbjct: 227 HPLDLVIDYHNTFEHICKILENSVKDKFIEKLVSKEELTRVHAFYSLNDLKLET---STI 283

Query: 193 NVYI 182
           N ++
Sbjct: 284 NTFM 287


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 397 WDPDTCCLHPNDLVNEHNLALEQALKLFHPELPDDMEREI 278
           WD ++C   P    NE NL +  A+++    L D   R +
Sbjct: 774 WDEESCSFDP----NETNLFISSAVEVLRETLLDAANRAV 809


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,843,891
Number of Sequences: 5004
Number of extensions: 34734
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)