Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_O12
(496 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0312 + 2469096-2470862 32 0.29
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 30 1.2
11_01_0678 - 5534879-5534883,5535430-5535529,5535638-5535799,553... 29 2.1
10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512... 28 3.6
07_03_0910 - 22519006-22519159,22519300-22519355,22519433-225197... 28 3.6
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578... 28 4.7
12_02_1127 - 26334225-26334500,26334600-26334761,26334849-263349... 27 6.3
09_06_0227 - 21684490-21685767 27 8.3
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534... 27 8.3
03_05_0960 + 29221087-29221091,29221370-29221468,29221773-292218... 27 8.3
02_05_1305 - 35586499-35586601,35586963-35587034,35587111-355872... 27 8.3
02_01_0181 + 1237167-1237820,1238053-1238142,1238689-1238841,123... 27 8.3
>03_01_0312 + 2469096-2470862
Length = 588
Score = 31.9 bits (69), Expect = 0.29
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = -1
Query: 370 PNDLVNEHNLALEQALKLFHPELPDDMEREILKQFIKSKYDDLRELNDAANETAIASAVN 191
P D V + N+++E LK HP++ M E++ + Y D R + + A +V
Sbjct: 451 PEDGVRKGNVSIEDRLKSIHPDMVKKMREEVISLIPRVIYADPRSKLETLKD-AFDVSVE 509
Query: 190 VYIKKM 173
I K+
Sbjct: 510 AIINKV 515
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 436 LSLSFYVNYMSLFWDPDTCCLHPNDLVNEHNLALEQAL 323
+SL V ++ FW P+T H D+V E ++++E+ L
Sbjct: 285 ISLLAIVALLASFWLPETLHKHTQDMVLEDSISVEEGL 322
>11_01_0678 -
5534879-5534883,5535430-5535529,5535638-5535799,
5536000-5536966,5537444-5537561,5538682-5538871,
5538952-5539107,5539296-5540315
Length = 905
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 196 VNVYIKKMDKATEFKGWWVPTLGIPYIVNLANRSSYHE 83
V V+ K++D+ G W+ TL I ++ N+S HE
Sbjct: 420 VKVHCKEVDEVVYKIGKWLSTLDIKVLIKRRNQSPKHE 457
>10_08_0850 +
21050164-21050189,21050874-21050979,21051186-21051257,
21051775-21051828,21052077-21052184,21052653-21052802,
21052914-21053258,21053361-21054801,21054844-21055675,
21057060-21057325,21057530-21059603,21060172-21060442,
21060556-21060990
Length = 2059
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -1
Query: 316 FHPELPDDMEREILKQFIKSKYDDLRELNDAANETAIASAVNVYIKKMDKATEFK 152
F+P+ E + K++++S Y D E + A E ++ Y+ K D AT+ K
Sbjct: 15 FYPQTLSCAEETLTKEYVQSGYKDTVEGIEEAREIVLSQI--PYLSKPDIATKCK 67
>07_03_0910 -
22519006-22519159,22519300-22519355,22519433-22519702,
22519808-22519986,22520146-22520374,22520985-22521180,
22521728-22521818,22521921-22521975,22522812-22522902,
22523366-22523424,22524000-22524050
Length = 476
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -1
Query: 370 PNDLVNEHNLALEQALKLFHPELPDDMEREILKQFIKSKYDDLR 239
P + ++ E++ + ELP + +R ++ FI++KY+D R
Sbjct: 78 PEQVAFIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEDKR 121
>12_02_0017 -
12357029-12357070,12357434-12357503,12357722-12357852,
12358836-12358882,12359762-12360044,12360547-12362413,
12362454-12362665
Length = 883
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -1
Query: 370 PNDLVNEHNLALEQALKLFHPELPDDMEREILKQFIKSKYDDLREL 233
P + V H L L + +KL P+ ++ + I ++ I S DD+ +
Sbjct: 606 PRNWVPHHELVLREYIKLQDPKFFCELHKTIKRKEINSPQDDVSRM 651
>12_02_1127 -
26334225-26334500,26334600-26334761,26334849-26334938,
26335075-26335236,26335330-26335431,26335562-26335633,
26335716-26335851,26335939-26336120,26336387-26336406,
26336440-26336521,26336612-26336713,26336796-26336909,
26337412-26337462,26337583-26337651,26337972-26338049,
26338357-26338458,26338785-26338865,26339008-26339109,
26339217-26339576
Length = 780
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 5 VVFLGRAVHAIATIRVEIKKSSFLGFLVIGRSISQVDNIRN 127
+ FLG V + RV +K S LGF G ++Q IRN
Sbjct: 100 LTFLGVTVLVVPAFRV-VKASPILGFFCAGVVLNQFGLIRN 139
>09_06_0227 - 21684490-21685767
Length = 425
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 478 LKEINRSKNRKQFMLSLSFYVNYMSLFWDPDTCCL 374
LK+I RS+N + L+ +S FW ++C L
Sbjct: 379 LKKIQRSQNSISYFLANKARAETLSKFWPDESCNL 413
>09_04_0741 -
19852339-19852497,19853185-19853246,19853352-19853415,
19853561-19853614,19853744-19853890,19854460-19854564,
19854651-19854794,19854987-19855093,19855613-19855712,
19855804-19855833,19856492-19856608,19856705-19856828,
19857143-19857189,19857272-19857400,19857777-19857852,
19858446-19858543,19858630-19858671,19858811-19859044
Length = 612
Score = 27.1 bits (57), Expect = 8.3
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Frame = -1
Query: 340 ALEQALKLFHPELPDDME---REILKQFIKSKYDDLRELNDAANETAIASAVNVYIKKMD 170
AL++A+K FH + + + + L+ S+ ++E+N + + + ++K+
Sbjct: 351 ALQRAVKNFHTMIEAEKQERAQSALRAHSSSRKSSMKEINVPEDCADLTGQLQPFVKEEV 410
Query: 169 KATEFKGWWVPTLGIPYIVNLANRSSYHEEAKKA 68
T F G + T + L++ SSY E + A
Sbjct: 411 LVTVFNGSFPCTAEEFFNTLLSDDSSYITEFRTA 444
>03_05_0960 +
29221087-29221091,29221370-29221468,29221773-29221815,
29222056-29222154,29222240-29222485,29222633-29222941
Length = 266
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 409 MSLFWDPDTCCLHPNDLVNEHNL 341
M+ FW DT H N ++NEH++
Sbjct: 229 MASFWASDTKTDHVNKVINEHSV 251
>02_05_1305 -
35586499-35586601,35586963-35587034,35587111-35587232,
35587767-35587826,35587919-35587997,35588219-35588307,
35588405-35588492,35591761-35591821,35592546-35592890,
35593094-35594351
Length = 758
Score = 27.1 bits (57), Expect = 8.3
Identities = 21/82 (25%), Positives = 36/82 (43%)
Frame = -1
Query: 487 FXNLKEINRSKNRKQFMLSLSFYVNYMSLFWDPDTCCLHPNDLVNEHNLALEQALKLFHP 308
F KE++ +K M+ F NY L W D C + N+ V + E + F P
Sbjct: 400 FCKAKELDEAKEALFEMMGAGFSPNYSVLSWIVDGLC-NKNNAVAVLAIPDELMKRGFPP 458
Query: 307 ELPDDMEREILKQFIKSKYDDL 242
+ + R ++++ K + DL
Sbjct: 459 D--KAVYRSLIRRLCKKGFIDL 478
>02_01_0181 +
1237167-1237820,1238053-1238142,1238689-1238841,
1238934-1239045,1239460-1239623,1239709-1240047
Length = 503
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 59 KKSSFLGFLVIGRSISQVDNIRNPQSW 139
++SSFLG + G ++Q+DN R W
Sbjct: 106 RRSSFLGGIFGGGGVAQLDNARAAVRW 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,585,383
Number of Sequences: 37544
Number of extensions: 209531
Number of successful extensions: 616
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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