Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O12
         (496 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20)              32   0.23 
SB_41427| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_20303| Best HMM Match : Trans_reg_C (HMM E-Value=0.38)              28   3.7  
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               27   8.5  
SB_30718| Best HMM Match : XPA_N (HMM E-Value=0.55)                    27   8.5  
SB_15078| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20)
          Length = 556

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -1

Query: 358 VNEHNLALEQALKLFHPELPDDMEREILKQFIKS 257
           V   N+  ++   +FH + PD +++E+L +FIKS
Sbjct: 275 VLSENVESKETYAMFHSKTPDSIQKEVLGEFIKS 308


>SB_41427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 271 QFIKSKYDDLRELNDAANETAIASAVNVYIKKMDKATEFKGWW 143
           +F+ SK +  R LN   N  A  SA+N      D  +   G W
Sbjct: 10  EFLSSKRNKKRSLNSIENIVAALSAINTVSSDADDDSATSGAW 52


>SB_20303| Best HMM Match : Trans_reg_C (HMM E-Value=0.38)
          Length = 1354

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 376 LHPNDLVNEHNLALEQALKLFHPEL 302
           LH N  V EH+  ++  LK FH EL
Sbjct: 655 LHDNTHVQEHSAMIDWVLKKFHEEL 679


>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3306

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 265  IKSKYDDLRELNDAANETA 209
            IKS+ D+LRELND   E A
Sbjct: 2572 IKSQIDELRELNDEVQEKA 2590


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
 Frame = -1

Query: 490 QFXNLKEINRSKNRKQFMLSLSFYVNYMSLFWDPDTCCLHPNDLVNEHNLALEQALKLFH 311
           ++ +L+++   K  +  +L  S      S F   +T CL PN    E    L+Q L    
Sbjct: 321 EYSSLQQMLGEKENEISLLEASLNERNQS-FTVMETSCLEPNTKAEEVKSELDQELAKHE 379

Query: 310 PELPDDMER-EILKQFIKSKYDDLRELNDAANETAIASA 197
            E+    +R + LK+  ++   +  EL  +  E + A A
Sbjct: 380 AEIATWKKRAQALKKKYEATLKEKGELESSHKELSDALA 418


>SB_30718| Best HMM Match : XPA_N (HMM E-Value=0.55)
          Length = 157

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 306 NCQMTWREKYLNSSSSRSMTIC 241
           NC +TW EK+      RS  +C
Sbjct: 36  NCDVTWHEKFFARMRDRSCYLC 57


>SB_15078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/26 (42%), Positives = 21/26 (80%)
 Frame = -1

Query: 322 KLFHPELPDDMEREILKQFIKSKYDD 245
           +LF+P++PD++E++I+ Q  K+K  D
Sbjct: 677 RLFNPKIPDNVEQKIIGQ--KAKQSD 700


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,501,897
Number of Sequences: 59808
Number of extensions: 241035
Number of successful extensions: 546
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)