Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O12
         (496 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03980.1 68418.m00378 GDSL-motif lipase/hydrolase family prot...    30   0.98 
At3g43740.2 68416.m04673 leucine-rich repeat family protein cont...    28   3.0  
At3g43740.1 68416.m04672 leucine-rich repeat family protein cont...    28   3.0  
At1g51490.1 68414.m05795 glycosyl hydrolase family 1 protein con...    28   3.0  
At2g38823.1 68415.m04770 expressed protein                             27   6.9  
At1g58290.1 68414.m06631 glutamyl-tRNA reductase 1 / GluTR (HEMA...    27   6.9  
At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing pro...    27   9.2  

>At5g03980.1 68418.m00378 GDSL-motif lipase/hydrolase family protein
           similar to lipase [Arabidopsis thaliana] GI:1145627;
           contains Pfam profile:PF00657 Lipase/Acylhydrolase with
           GDSL-like motif
          Length = 323

 Score = 29.9 bits (64), Expect = 0.98
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 397 WDPDTCCLHPNDLVNEHNLALEQALKLFHPELPD 296
           +D + C  H N+   +HN  L++A+     E PD
Sbjct: 198 YDDNGCLTHLNEFAMDHNNQLQEAIASLRKEFPD 231


>At3g43740.2 68416.m04673 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to somatic
           embryogenesis receptor-like kinase 2 [Arabidopsis
           thaliana] gi|14573457|gb|AAK68073
          Length = 248

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 35  IATIRVEIKKSSFLGFLVIGRSISQVDNIRNPQSWDPPSLKFCGFIH 175
           +A IR+    S       + RS+S  DN+   QSWDP  +  C + H
Sbjct: 19  LALIRLTEANSEGDALHALRRSLSDPDNV--VQSWDPTLVNPCTWFH 63


>At3g43740.1 68416.m04672 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to somatic
           embryogenesis receptor-like kinase 2 [Arabidopsis
           thaliana] gi|14573457|gb|AAK68073
          Length = 218

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 35  IATIRVEIKKSSFLGFLVIGRSISQVDNIRNPQSWDPPSLKFCGFIH 175
           +A IR+    S       + RS+S  DN+   QSWDP  +  C + H
Sbjct: 19  LALIRLTEANSEGDALHALRRSLSDPDNV--VQSWDPTLVNPCTWFH 63


>At1g51490.1 68414.m05795 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; similar to Cyanogenic Beta-Glucosidase
           (GI:1311386) (pdb:1CBG)  [Trifolium repens] (J. Mol.
           Biol. 229 (3), 791-793 (1993))
          Length = 484

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 367 NDLVNEHNL-ALEQALKLFHPELPDDMEREILKQFIKSKYDDLR 239
           N+L+NE     +E  + +FH ++P D  R I +  +K  Y D +
Sbjct: 121 NNLINELKANGIEPFVTIFHWDVPQDFRRRIWR-LLKPTYSDFK 163


>At2g38823.1 68415.m04770 expressed protein
          Length = 258

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = -1

Query: 388 DTCCLHPNDLVNEHNLALE-QALKLFHPELPDDME-REILKQFIKSKYDDLRE 236
           D C    +D + + ++ LE +ALK    EL  D E ++ +KQ+ K+KY DL +
Sbjct: 156 DVCNPTSHDSLRK-SVELEIKALKKLIRELQKDWEEKQHVKQYTKNKYKDLEQ 207


>At1g58290.1 68414.m06631 glutamyl-tRNA reductase 1 / GluTR (HEMA1)
           identical to glutamyl-tRNA reductase 1, chloroplast
           [SP|P42804]
          Length = 543

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = -1

Query: 250 DDLRELNDAANETAIASAVNVYIKKMDKATEFKGWWVPTLGIPYIVNLANRSSYHEEAKK 71
           DDL+E+  A  E  +  A+       +++T+F+ W      +P I  L    +Y E  + 
Sbjct: 402 DDLKEVVAANKEDRMRKAMEAQTIITEESTQFEAWRDSLETVPTIKKL---RAYAERIRV 458

Query: 70  AALLNFYSNRRDRMN 26
           A L    S   D +N
Sbjct: 459 AELEKCMSKMGDDIN 473


>At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing
           protein ZIGA3 (ZIGA3) nearly identical to ARF GAP-like
           zinc finger-containing protein ZIGA3 GI:10441352 from
           [Arabidopsis thaliana]; contains InterPro accession
           IPR001164: Human Rev interacting-like protein (hRIP)
          Length = 483

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = -1

Query: 370 PNDLVNEHNLALEQALKLFHPELPDDMEREILKQFIKSKYDDLR 239
           P  +    ++  ++A   +  ELP + +R  ++ FI++KY++ R
Sbjct: 78  PEQVAFIQSMGNDKANSYWEAELPPNYDRVGIENFIRAKYEEKR 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,542,112
Number of Sequences: 28952
Number of extensions: 175552
Number of successful extensions: 497
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)