Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O09
         (360 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41498| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.0  
SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_29880| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  
SB_34582| Best HMM Match : PAP2 (HMM E-Value=0.013)                    26   8.0  
SB_14684| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  

>SB_41498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 21/67 (31%), Positives = 26/67 (38%)
 Frame = -2

Query: 230 PAGVERGLPSPALCPAGTMKPWRLFINLFRMKLKNSCYARSLKPTPPKRKHRQNAFEA*D 51
           P   + G P P   PA   +     +      L+N C ARSL  T    K R  A E  D
Sbjct: 41  PLPEQNGEPGPMFEPAEDKEMVNCVVTYVADYLRNRCTARSLGMT----KKRAKALETFD 96

Query: 50  EMXRSTE 30
           E  R  +
Sbjct: 97  ERLRDAQ 103


>SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 864

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 289 DSIPCFGLLHNGRSPTHFHIQLG-WKEGCHRRHCVLQER 176
           D+  CF    N  S  HFH+ +    +GC+ +HC+  ++
Sbjct: 109 DAAECF---ENILSRMHFHLAMNEHDDGCNAKHCISHQK 144


>SB_29880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 49

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 124 PAMPEALSRHHRNGNTDKMPLKHEM 50
           P + E L+ H R    D MP  H+M
Sbjct: 2   PILEEGLALHQRQATKDLMPFHHKM 26


>SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1185

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 124 PAMPEALSRHHRNGNTDKMPLKHEM 50
           P + E L+ H R    D MP  H+M
Sbjct: 212 PILEEGLALHQRQATKDLMPFHHKM 236


>SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = -2

Query: 158 FINLFRMKLKNSCYARSLKPTPPKRKHRQNAFEA*DEMXRSTEMIQSVLR 9
           +++ FR+++K+ C   S + +    KH Q A  A  ++    +++   LR
Sbjct: 499 YVSSFRLRVKDGCATVSKRLSQKVSKHDQTAAMARAKVNSIRDLVSKALR 548


>SB_34582| Best HMM Match : PAP2 (HMM E-Value=0.013)
          Length = 279

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 30  FSASAHLISCFKGILSVFPFRWCRLKASGIAGVFQL 137
           F  + + + C + I   FPF WC    + +A + QL
Sbjct: 99  FFFAVYKLFCTRTIQGTFPFMWCAGWVNLVAVIIQL 134


>SB_14684| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 30  FSASAHLISCFKGILSVFPFRWCRLKASGIAGVFQL 137
           F  + + + C + I   FPF WC    + +A + QL
Sbjct: 143 FFFAVYKLFCTRTIQGTFPFMWCAGWVNLVAVIIQL 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,066,672
Number of Sequences: 59808
Number of extensions: 223031
Number of successful extensions: 556
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)