Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O08
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    95   1e-20
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    31   0.16 
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    29   0.65 
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    28   1.1  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   6.0  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   6.0  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 94.7 bits (225), Expect = 1e-20
 Identities = 73/205 (35%), Positives = 104/205 (50%), Gaps = 6/205 (2%)
 Frame = -1

Query: 607 QIGGEKNGGTRTV-PL-KRRKSFYPT-QEKI--RASSGGRPFSKHVRRIRPNLKIGTVCI 443
           ++ G KNGG R V P  +    +YP  +E +  +A    RP      ++R +L  GTVCI
Sbjct: 5   KVNGAKNGGERMVLPAGEAAAKYYPAYRENVPKKARKAVRP-----TKLRASLAPGTVCI 59

Query: 442 LLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTST-RISLGNFKLPK 266
           LLAGR  GKRVV++  L    L+VTGP+  N  P+RR+  RYVI TS  +I +    + K
Sbjct: 60  LLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEK 118

Query: 265 HFNDDYFXXXXXXXXXXXXXKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPD 86
            F   YF             K+ +  FA    K     +R  DQK VD  ++ AI A P+
Sbjct: 119 -FTKAYF----AKQKRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPN 173

Query: 85  KKVLRGYLKAAFGLRSSQEPXRLRF 11
              ++ YL A+F L +   P  ++F
Sbjct: 174 ---MKEYLAASFALSNGDRPHLMKF 195


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 399 PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS 533
           P S+ + P  LP+RR +T  I  L  ++  CLL    P  +R FS
Sbjct: 21  PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 20/88 (22%), Positives = 34/88 (38%)
 Frame = -2

Query: 273 CQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEP 94
           C NTS ++ +  +    N + N     ++L  K          + I R+  R    P E 
Sbjct: 391 CLNTSSIVFNATVNFTRNGKFNTSIFSSNLNPKVNELLQADFKQAILRK--RKNESPEEV 448

Query: 93  DPTRRCSADTSKRPSDSARAKSPXGCAS 10
           +P +    DTS    ++A    P   A+
Sbjct: 449 EPAKHQRTDTSTENQETAEVLDPEEIAA 476


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = -2

Query: 270 QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 133
           +NTS  +T   IRS SN   + K + T LP+ K+N F  S+++P++
Sbjct: 180 ENTSGDLT---IRSDSNY--SIKSLTTWLPKWKKNDFKTSNSQPVK 220


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = -2

Query: 249 TSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSA 70
           T+ +  S  +V S      TSL ++ RN+F  ++      +  RL + P   +P R    
Sbjct: 40  TNSQNSSVGSVHSPILESPTSLNRQHRNSFSFNNVSSPSLEDERLINFP-RVNPNRLM-- 96

Query: 69  DTSKRPSDSARAKS 28
            TSKRP++  +  S
Sbjct: 97  -TSKRPNELFKTSS 109


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = -2

Query: 300  PEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQST 121
            P F  +TSN  +TS  I S   R+      ++   +TS   K   T  +S+A      S 
Sbjct: 888  PTFKFSTSNSGSTSYSIPSSSSRNEGTTSYSSNITVTSSTLKPSLTSSVSTASSYIASSA 947

Query: 120  RL*SKPSEP 94
               +  +EP
Sbjct: 948  SSNTLSTEP 956


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,762
Number of Sequences: 5004
Number of extensions: 57741
Number of successful extensions: 209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)