Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_O08
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 116 1e-26
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 109 3e-24
10_07_0055 - 12424320-12424899,12424978-12425160,12425810-124259... 30 1.6
02_02_0470 - 10700092-10700505 30 2.1
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59... 29 3.6
10_08_0951 - 21769342-21769752 29 4.8
10_02_0100 + 5296783-5297568 29 4.8
08_01_0897 - 8839134-8839718 28 6.3
06_01_0767 + 5732573-5732670,5733223-5733278,5733928-5734007,573... 28 6.3
10_08_0103 + 14818893-14819082,14819878-14819934,14820948-148210... 28 8.3
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 28 8.3
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 116 bits (280), Expect = 1e-26
Identities = 79/181 (43%), Positives = 104/181 (57%), Gaps = 4/181 (2%)
Frame = -1
Query: 541 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 368
PT+ + +SS FS + + +R ++ GTV ILLAGR GKRVV + L SGLLLVT
Sbjct: 71 PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130
Query: 367 GPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDI 188
GPF N P+RR+ Q YVI TST++ + + K F+D YF EG ++
Sbjct: 131 GPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF---SRDKKQKAKKTEG-EL 185
Query: 187 FATKKE--KYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQEPXRLR 14
F T+KE K +P E +K DQK VD +IKAI A PD L+ YL A F LR +P +
Sbjct: 186 FETEKEATKNLP-EFKKEDQKVVDAELIKAIEAVPD---LKTYLGARFSLRDGDKPHEMV 241
Query: 13 F 11
F
Sbjct: 242 F 242
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 109 bits (261), Expect = 3e-24
Identities = 81/196 (41%), Positives = 107/196 (54%), Gaps = 7/196 (3%)
Frame = -1
Query: 592 KNGGTRTVPLK----RRKSFYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGR 428
KNGGT K FYP + K RA S + + ++R + GTV ILLAGR
Sbjct: 31 KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGR 87
Query: 427 HAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 248
+ GKRVV + L SGLLL+TGPF N P+RR+ Q YVI TST++ + K+ K F+D Y
Sbjct: 88 YMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISGVKVDK-FDDKY 146
Query: 247 FXXXXXXXXXXXXXKEGDDIFATKKE--KYVPSEQRKTDQKTVDEAVIKAIGARPDKKVL 74
F EG ++F T+KE K +P + +K DQK VD +IKAI PD
Sbjct: 147 F---ARDKKAKAKKTEG-ELFETEKEATKNLP-DFKKDDQKAVDAELIKAIEVVPD---- 197
Query: 73 RGYLKAAFGLRSSQEP 26
LK+ G R+S+ P
Sbjct: 198 ---LKSYLGARNSRWP 210
>10_07_0055 -
12424320-12424899,12424978-12425160,12425810-12425958,
12426339-12426518,12426610-12426729,12427240-12427383,
12427613-12427777,12427879-12428184,12428258-12428621,
12428746-12429074
Length = 839
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/88 (22%), Positives = 33/88 (37%)
Frame = -2
Query: 270 QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPD 91
QN ++TSR + K++ H+ K I+ + T + S
Sbjct: 682 QNIEELLTSRSPSKKRKQKDKTDVTTEDASTNKQDLSHVGKTKRIKSEKTTCEKESSNKK 741
Query: 90 PTRRCSADTSKRPSDSARAKSPXGCASK 7
PT S + +SA+ KSP + K
Sbjct: 742 PTNEDSGTSMAFLKNSAKRKSPGFLSDK 769
>02_02_0470 - 10700092-10700505
Length = 137
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 466 LKIGTVCILLAGRHAGKRVVLVGILPSG 383
LK G ILL GR+AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRYAGRKAVIVRVFEEG 32
>04_01_0058 +
592846-593185,594641-595182,596298-596987,597078-597233,
597277-597856,598601-598764,598907-599100,599702-599750,
599777-599806
Length = 914
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -2
Query: 171 RNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRPSDSARAKS 28
+NT LS+AK + +S ++ KPS + + +KR SD+ R S
Sbjct: 639 KNTRKLSNAKESKDESPQVEPKPSSANDCDNPISQVAKRASDNIRGHS 686
>10_08_0951 - 21769342-21769752
Length = 136
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 466 LKIGTVCILLAGRHAGKRVVLVGILPSG 383
LK G ILL GR AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRFAGRKAVIVRVFEEG 32
>10_02_0100 + 5296783-5297568
Length = 261
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 123 TRL*SKPSEPDPTRRCSADTSKRPSDSARAKSP 25
TR SKP P PT+ SA + +D A A P
Sbjct: 142 TRSSSKPPAPAPTKTASASDHAKKTDMAAAHKP 174
>08_01_0897 - 8839134-8839718
Length = 194
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +3
Query: 42 RSPKAALRYPRSTFLSGRAPMALITASSTVF*SVLRCSDGTYFSFFVAKMSSP 200
R+ +AA+R +T S + AL A S S+L C DG S F SSP
Sbjct: 22 RAARAAVRIAATTTASSPSSPALAAALSRTP-SLLDCMDGDDDSIFYTPASSP 73
>06_01_0767 +
5732573-5732670,5733223-5733278,5733928-5734007,
5735334-5735372,5735563-5735950,5736049-5737562
Length = 724
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 107 SHRSPTRQEGAPRIPQSGLR 48
SHR P QEGAP P S +R
Sbjct: 157 SHRWPEAQEGAPAFPPSTMR 176
>10_08_0103 +
14818893-14819082,14819878-14819934,14820948-14821056,
14821137-14821362,14821521-14821637,14821735-14821893
Length = 285
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = -2
Query: 231 SASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSK 58
S SN+QSN T K+R F +A+ + R S+R +P D A TSK
Sbjct: 212 SDSNIQSNKSAEHTGTTVKRRERFRCVNARIVLRTSSR--RRPIGVDFWDEYFASTSK 267
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 330 FLSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSN 208
FL+ + PP + H C N S++I R + N QSN
Sbjct: 545 FLNLVAKFPPTKRHINAEACSNLSLLIDDMRRKLNLNEQSN 585
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,733,431
Number of Sequences: 37544
Number of extensions: 439403
Number of successful extensions: 1219
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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