Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O08
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               80   2e-15
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.6  
SB_44342| Best HMM Match : Tctex-1 (HMM E-Value=1.7e-05)               29   2.8  
SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05)                28   6.4  
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_43644| Best HMM Match : SH3_1 (HMM E-Value=0)                       28   8.5  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 47/118 (39%), Positives = 61/118 (51%)
 Frame = -1

Query: 364 PFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDIF 185
           PF  N  PLRRIPQ YVI TST I + + KLP+H     F             K  +D+F
Sbjct: 2   PFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEH----AFADESYFKGEPKKKKRSEDMF 57

Query: 184 ATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQEPXRLRF 11
               E+  PSEQR  DQK VD+ ++  I A P+   ++ YL + F LR  Q P  + F
Sbjct: 58  EEAAEEKKPSEQRIADQKAVDDQILPKISAVPN---MKKYLSSLFSLRKGQFPHDMVF 112


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/77 (28%), Positives = 35/77 (45%)
 Frame = -2

Query: 270  QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPD 91
            + T ++ T++ +   S+     +R   S     R   H    KP  R++T   SKP+EPD
Sbjct: 966  RQTPLVDTTKAVGPLSSTSETRRRQSDSDSVLSRRLDH---TKPPLRKTTSNDSKPTEPD 1022

Query: 90   PTRRCSADTSKRPSDSA 40
             +RR     S   S +A
Sbjct: 1023 SSRRTYRAASMDASTTA 1039


>SB_44342| Best HMM Match : Tctex-1 (HMM E-Value=1.7e-05)
          Length = 608

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -2

Query: 150 SAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRPSDSARAKSPXGCASK 7
           S KP++ +S++  S+     P+R+    + K+ S  +R+ SP   A +
Sbjct: 204 SLKPVKAKSSKGRSRSPSKSPSRKSGKKSGKKSSRKSRSPSPSAKAKR 251


>SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 473 TQPEDRNCLHSPRW*TCRQEGCTCWN-SAQRSAFSYWTFCFQFVPATPYS 327
           TQ   R   HSPR   CR   CT +N    +   S+ T C +  P   +S
Sbjct: 84  TQEAYRKNSHSPRKRQCRNRLCTSYNWIRNKETSSFVTLCHREKPVGHFS 133


>SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05)
          Length = 520

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = -2

Query: 177 KKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRPSDSARAKSPXGCAS 10
           ++RN    +   P  R+   L S   EP+ T+  S    KRPS   R KSP   AS
Sbjct: 251 EERNERKSAGKGPPERKIAGLQSVKEEPETTQS-SEQLPKRPSSPQRPKSPNRPAS 305


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -3

Query: 581 NQNSTPQ---T*EVLLPHSGENPCFIWWPSIQQACTQDPTQP 465
           NQ++ PQ   T  VL+PH G  PC   +P+         TQP
Sbjct: 94  NQSTLPQGNATQWVLIPHKGSMPCIGTFPNAINTWIIPGTQP 135


>SB_43644| Best HMM Match : SH3_1 (HMM E-Value=0)
          Length = 704

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -2

Query: 219 VQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQ--STRL*SKPSEPDPTRRCSADTSKRPSD 46
           + S  K     +P   RNT    S KP+R Q       +KPS    T +   +  K P  
Sbjct: 288 LHSKPKPERPKIPDHNRNTEQKESPKPLRFQIIDPPKDTKPSSGISTSKRIPERPKPPDL 347

Query: 45  SARAKS 28
           SAR K+
Sbjct: 348 SARMKA 353


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,732,815
Number of Sequences: 59808
Number of extensions: 466118
Number of successful extensions: 1577
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1556
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)