Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_O08
(706 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 135 3e-32
U58762-3|AAM15611.1| 331|Caenorhabditis elegans Hypothetical pr... 32 0.35
U58762-2|AAK39302.1| 722|Caenorhabditis elegans Hypothetical pr... 32 0.35
U58762-1|AAK39301.1| 732|Caenorhabditis elegans Hypothetical pr... 32 0.35
Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical pr... 31 0.80
U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin prote... 31 0.80
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 31 0.80
U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin prote... 31 0.80
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote... 31 0.80
AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin pro... 31 0.80
Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr... 28 5.7
AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily a... 28 7.5
AY741200-1|AAU89102.1| 596|Caenorhabditis elegans STE20-like se... 27 9.9
AL132898-15|CAC14417.2| 596|Caenorhabditis elegans Hypothetical... 27 9.9
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ... 27 9.9
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 135 bits (327), Expect = 3e-32
Identities = 75/157 (47%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Frame = -1
Query: 478 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 302
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q +VI TS
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126
Query: 301 TRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDIFATKKEKYVPSEQRKTDQKTVD 122
++++ K+P+H ND+YF K G +IFA+ K +Y SEQRK D KTVD
Sbjct: 127 LKVNVSGVKIPEHINDEYF------KRKSTAQKTGKNIFASGKTEYTVSEQRKKDIKTVD 180
Query: 121 EAVIKAIGARPDKKVLRGYLKAAFGLRSSQEPXRLRF 11
++ AI P+ K L GYL F L +Q P +++F
Sbjct: 181 APILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217
>U58762-3|AAM15611.1| 331|Caenorhabditis elegans Hypothetical
protein T27F7.2c protein.
Length = 331
Score = 32.3 bits (70), Expect = 0.35
Identities = 23/76 (30%), Positives = 33/76 (43%)
Frame = -2
Query: 231 SASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRP 52
S+S N KR+ T PQ L +R ++ P EP PT C+A T+
Sbjct: 58 SSSTSSVNPKRMSTIEPQAPTREQLLQLQNQMRCAASS--PVPEEPRPTDLCAASTTTST 115
Query: 51 SDSARAKSPXGCASKS 4
S A + S G +S +
Sbjct: 116 SSVASSSSSNGSSSST 131
>U58762-2|AAK39302.1| 722|Caenorhabditis elegans Hypothetical
protein T27F7.2b protein.
Length = 722
Score = 32.3 bits (70), Expect = 0.35
Identities = 23/76 (30%), Positives = 33/76 (43%)
Frame = -2
Query: 231 SASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRP 52
S+S N KR+ T PQ L +R ++ P EP PT C+A T+
Sbjct: 427 SSSTSSVNPKRMSTIEPQAPTREQLLQLQNQMRCAASS--PVPEEPRPTDLCAASTTTST 484
Query: 51 SDSARAKSPXGCASKS 4
S A + S G +S +
Sbjct: 485 SSVASSSSSNGSSSST 500
>U58762-1|AAK39301.1| 732|Caenorhabditis elegans Hypothetical
protein T27F7.2a protein.
Length = 732
Score = 32.3 bits (70), Expect = 0.35
Identities = 23/76 (30%), Positives = 33/76 (43%)
Frame = -2
Query: 231 SASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRP 52
S+S N KR+ T PQ L +R ++ P EP PT C+A T+
Sbjct: 437 SSSTSSVNPKRMSTIEPQAPTREQLLQLQNQMRCAASS--PVPEEPRPTDLCAASTTTST 494
Query: 51 SDSARAKSPXGCASKS 4
S A + S G +S +
Sbjct: 495 SSVASSSSSNGSSSST 510
>Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical
protein C54C8.12 protein.
Length = 82
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 547 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 413
FYPT+ +A S G P + PN ++ V A RHAG R
Sbjct: 26 FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70
>U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin protein
1, isoform a protein.
Length = 953
Score = 31.1 bits (67), Expect = 0.80
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Frame = -2
Query: 306 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 133
PPP S TS NC ++ + + + SAS S R + S N + + +
Sbjct: 498 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 557
Query: 132 RQSTRL*SKPSEPDPTRRCSADTSKRPSDSARAKS 28
+ +L S+ S + S+ P D + K+
Sbjct: 558 DINKKLISQTSRAESPLAASSSFLSSPDDDTKQKN 592
>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
1, isoform b protein.
Length = 1028
Score = 31.1 bits (67), Expect = 0.80
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Frame = -2
Query: 306 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 133
PPP S TS NC ++ + + + SAS S R + S N + + +
Sbjct: 573 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 632
Query: 132 RQSTRL*SKPSEPDPTRRCSADTSKRPSDSARAKS 28
+ +L S+ S + S+ P D + K+
Sbjct: 633 DINKKLISQTSRAESPLAASSSFLSSPDDDTKQKN 667
>U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin protein
1, isoform c protein.
Length = 962
Score = 31.1 bits (67), Expect = 0.80
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Frame = -2
Query: 306 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 133
PPP S TS NC ++ + + + SAS S R + S N + + +
Sbjct: 507 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 566
Query: 132 RQSTRL*SKPSEPDPTRRCSADTSKRPSDSARAKS 28
+ +L S+ S + S+ P D + K+
Sbjct: 567 DINKKLISQTSRAESPLAASSSFLSSPDDDTKQKN 601
>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
1, isoform d protein.
Length = 1106
Score = 31.1 bits (67), Expect = 0.80
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Frame = -2
Query: 306 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 133
PPP S TS NC ++ + + + SAS S R + S N + + +
Sbjct: 651 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 710
Query: 132 RQSTRL*SKPSEPDPTRRCSADTSKRPSDSARAKS 28
+ +L S+ S + S+ P D + K+
Sbjct: 711 DINKKLISQTSRAESPLAASSSFLSSPDDDTKQKN 745
>AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin
protein.
Length = 953
Score = 31.1 bits (67), Expect = 0.80
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Frame = -2
Query: 306 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 133
PPP S TS NC ++ + + + SAS S R + S N + + +
Sbjct: 498 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 557
Query: 132 RQSTRL*SKPSEPDPTRRCSADTSKRPSDSARAKS 28
+ +L S+ S + S+ P D + K+
Sbjct: 558 DINKKLISQTSRAESPLAASSSFLSSPDDDTKQKN 592
>Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical
protein F31B12.2 protein.
Length = 1089
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -2
Query: 234 RSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPS 100
RSA +V+ +V+ + + R + HLS+++PI +S S P+
Sbjct: 364 RSAVSVEGVLLKVLAEVAELVRQSQHLSASEPITEESPSAGSPPA 408
>AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily
assigned gene nameprotein 63 protein.
Length = 604
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -2
Query: 153 SSAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRP--SDSARAKSP 25
S A+P +++T KP+ P R+ + D+SK+P SDS SP
Sbjct: 369 SLAEPENKENT----KPNSPYSLRKRAVDSSKKPGKSDSPAVSSP 409
>AY741200-1|AAU89102.1| 596|Caenorhabditis elegans STE20-like
serine/threonine kinase protein.
Length = 596
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = -2
Query: 288 SATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*S 109
+ +N TS ++ SA+N + T+ Q TF+ + I ST S
Sbjct: 7 AGNTNTTTTSSAASAAAAHSAANASTITSEYSTT--QTTTGTFNTDTLSSIGSTSTLHGS 64
Query: 108 KPSEPDP 88
+PS+P P
Sbjct: 65 QPSQPPP 71
>AL132898-15|CAC14417.2| 596|Caenorhabditis elegans Hypothetical
protein Y59A8B.23 protein.
Length = 596
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = -2
Query: 288 SATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*S 109
+ +N TS ++ SA+N + T+ Q TF+ + I ST S
Sbjct: 7 AGNTNTTTTSSAASAAAAHSAANASTITSEYSTT--QTTTGTFNTDTLSSIGSTSTLHGS 64
Query: 108 KPSEPDP 88
+PS+P P
Sbjct: 65 QPSQPPP 71
>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
protein Y20F4.4 protein.
Length = 1319
Score = 27.5 bits (58), Expect = 9.9
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Frame = -2
Query: 330 FLSAM*SAPPPEFHSATSN---CQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTF 160
F S + PP + +A+ N ++ S R + S Q+ R +S + R+
Sbjct: 329 FKSKAPAKPPAQNGNASHNEHRSRSRSRATVPRSAQYRSEHQTEHARTGSSSHHESRS-- 386
Query: 159 HLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRPSDSARAKSP 25
++A P+ S SKP P PT R + + P++ R SP
Sbjct: 387 RAAAAAPVGASSQ---SKPPAPSPTSRETDSIPEAPAEPIRNISP 428
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,929,005
Number of Sequences: 27780
Number of extensions: 345321
Number of successful extensions: 983
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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