Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O08
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...   126   2e-29
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...   126   2e-29
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...   124   6e-29
At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DN...    32   0.43 
At3g10440.1 68416.m01252 hypothetical protein                          31   0.74 
At1g78120.1 68414.m09104 tetratricopeptide repeat (TPR)-containi...    31   0.98 
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   1.7  
At5g08320.1 68418.m00979 expressed protein predicted proteins, H...    29   4.0  
At5g56890.1 68418.m07099 protein kinase family protein contains ...    28   5.2  
At3g05050.1 68416.m00548 protein kinase family protein contains ...    28   5.2  
At2g27270.1 68415.m03277 expressed protein                             28   5.2  
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea...    28   6.9  
At3g08670.1 68416.m01007 expressed protein                             27   9.2  
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel...    27   9.2  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score =  126 bits (303), Expect = 2e-29
 Identities = 78/186 (41%), Positives = 106/186 (56%)
 Frame = -1

Query: 568 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 389
           P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L 
Sbjct: 57  PVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114

Query: 388 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXX 209
           SGLLLVTGPF  N  PLRR+ Q YVIGTST++ +    L K F+D YF            
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF---GKVAEKKKK 170

Query: 208 XKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQE 29
             EG+   A K+EK    + +K DQK VD A+IKAI A P+   L+ YL A F L+   +
Sbjct: 171 KTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPE---LKTYLGARFSLKQGMK 227

Query: 28  PXRLRF 11
           P  L F
Sbjct: 228 PHELVF 233


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score =  126 bits (303), Expect = 2e-29
 Identities = 78/186 (41%), Positives = 106/186 (56%)
 Frame = -1

Query: 568 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 389
           P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L 
Sbjct: 57  PVEKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114

Query: 388 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXX 209
           SGLLLVTGPF  N  PLRR+ Q YVIGTST++ +    L K F+D YF            
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF---GKVAEKKKK 170

Query: 208 XKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQE 29
             EG+   A K+EK    + +K DQK VD A+IKAI A P+   L+ YL A F L+   +
Sbjct: 171 KTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPE---LKTYLGARFSLKQGMK 227

Query: 28  PXRLRF 11
           P  L F
Sbjct: 228 PHELVF 233


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score =  124 bits (299), Expect = 6e-29
 Identities = 78/186 (41%), Positives = 105/186 (56%)
 Frame = -1

Query: 568 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 389
           P+++   FYP ++ ++     R   K  + ++ ++  GTV I+LAGR  GKRVV +  L 
Sbjct: 57  PVEKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQLS 114

Query: 388 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXX 209
           SGLLLVTGPF  N  PLRR+ Q YVIGTST+I +      K F+D YF            
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYF---GKVAEKKKK 170

Query: 208 XKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQE 29
             EG+   A K+EK    +++K DQKTVD A+IK+I A P+ KV   YL A F L    +
Sbjct: 171 KTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKV---YLGARFSLSQGMK 227

Query: 28  PXRLRF 11
           P  L F
Sbjct: 228 PHELVF 233


>At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DNA
            topoisomerase II / DNA gyrase (TOP2) identical to
            SP|P30182 DNA topoisomerase II (EC 5.99.1.3) {Arabidopsis
            thaliana}
          Length = 1473

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 22/56 (39%), Positives = 29/56 (51%)
 Frame = -1

Query: 184  ATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQEPXRL 17
            ATK  K  P+  RK  ++TV    + AIG  P+KKV R    + F  +SS    RL
Sbjct: 1354 ATKAAK-PPAAPRKRGKQTVASTEVLAIGVSPEKKV-RKMRSSPFNKKSSSVMSRL 1407


>At3g10440.1 68416.m01252 hypothetical protein
          Length = 556

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
 Frame = -2

Query: 288 SATSNCQNTSMMITSRRIRSASNVQSNAKRVMTS-----LPQKKRNTFHLSSAK-PIRRQ 127
           S++S  +  S   T +++  A  ++ +A+  +T        Q+   +  L  ++ P+RR+
Sbjct: 256 SSSSKTREASQTETLQKVVDAKEIKGDARFSLTKHSDWLKSQEPEPSESLYESRFPLRRR 315

Query: 126 STRL*SKPSEPDPTRRCSADTSKRPSDSARA 34
           S RL S+  EP  +   S +T+KR   + R+
Sbjct: 316 SARLKSQEPEPSESFHDSIETTKRRRSAIRS 346


>At1g78120.1 68414.m09104 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|Q99615 DnaJ homolog
           subfamily C member 7 (Tetratricopeptide repeat protein
           2) {Homo sapiens}; contains Pfam profile PF00515: TPR
           Domain
          Length = 530

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = -2

Query: 234 RSASNVQSNAKRVMTS---LPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADT 64
           R+  N+ S +   +T+   LP+K  +T    S++P +  S +   KP   +   R S+++
Sbjct: 41  RAKDNLSSKSSTTVTNPKILPRKSTDT----SSQPKKSDSQKPQQKPKPDENHPRKSSES 96

Query: 63  SKRPSDSARAKSPXG 19
           +++ SDSAR     G
Sbjct: 97  ARKSSDSARKSISSG 111


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 568 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 479
           P++RR+S  P +E++  S GGR  S  H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555


>At5g08320.1 68418.m00979 expressed protein predicted proteins, Homo
           sapiens and Caenorhabditis elegans
          Length = 150

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 305 GADHIALRNTA*RARIESKRSSN*KQTAGQNSNKYNPLACMSTSEE 442
           G D +  +NT      + +R S  ++T  ++S K NP+ C + S E
Sbjct: 85  GTDTVLQQNTMPLKVGKRRRDSEMQETGSEDSEKVNPVFCSACSTE 130


>At5g56890.1 68418.m07099 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 1113

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
 Frame = -2

Query: 306 PPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHL-SSAKPIRR 130
           PPP+ H A S     S++  +      + V  + KR+  +L       F L SS++P + 
Sbjct: 383 PPPQSHHAPSPPIPDSLISPAH-----APVSFSMKRISPALAPSPTQVFPLRSSSRPSKS 437

Query: 129 QSTRL*SKPSE----PDPTRRCSADTSKRPSDSARAKSPXGC 16
           +   L   P +    P P   CS+     P  +    SP GC
Sbjct: 438 RKFPL-GPPLQAFPPPPPNSDCSSTICLEPYTNTPPGSPCGC 478


>At3g05050.1 68416.m00548 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 593

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = -2

Query: 282 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKP 103
           T   ++TS ++    + SASN +   +     + QKK N F ++ AK  + +  R  SKP
Sbjct: 40  TETTESTSAVV----VASASNGEE-VRNHEDVVDQKKENGFVVTEAKERKSKGERKRSKP 94

Query: 102 SEPDPTR 82
             PDP R
Sbjct: 95  --PDPRR 99


>At2g27270.1 68415.m03277 expressed protein
          Length = 231

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -1

Query: 541 PTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGP 362
           PT++K  A   G   SKH R +  +    + C+       GK ++  G+  + +LL+   
Sbjct: 21  PTKKKTEAKEEGAAASKHSRVVYSD---KSRCL----SKNGKTIIYFGVPAALILLIICV 73

Query: 361 FAFNSCPLR-RIPQ 323
           FAFN   ++ R+P+
Sbjct: 74  FAFNYIAIQPRVPR 87


>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to Rbap46 polypeptide (GI:9454362) [Gallus
           gallus]
          Length = 351

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 602 WR*EEWGNQNSTPQT*EV--LLPHSGENPCFIWWPS 501
           W+  E   Q ++PQ   V  L  H G+  C +WWPS
Sbjct: 96  WQIPELYGQLNSPQLERVASLDAHVGKINCVLWWPS 131


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 75  STFLSGRAPMALITASSTVF*SVLRCSDGTYFSFFVAKMSSPS 203
           S+F SGR+P +++  SS    S +R S  +  S   A+ S+P+
Sbjct: 168 SSFTSGRSPSSILNTSSASVSSYIRPSSPSSRSSSSARPSTPT 210


>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
            similar to BEIGE (GI:3928547) [Rattus norvegicus];
            Similar to gb|U70015 lysosomal trafficking regulator from
            Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
            repeats. ESTs gb|T43386 and gb|AA395236 come from this
            gene
          Length = 3601

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -2

Query: 312  SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 133
            S PP   +S     Q  + + T  +   AS    ++K  MTS  Q ++N F + S   + 
Sbjct: 1082 SWPPAAGYSFVCWFQFRNFLTTQGKESEASKAGGSSKTRMTSAQQHEQNIFRMFSVGAVS 1141

Query: 132  RQS 124
             +S
Sbjct: 1142 NES 1144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,202,543
Number of Sequences: 28952
Number of extensions: 327230
Number of successful extensions: 936
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)