Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O07
         (662 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    25   0.55 
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    23   3.0  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   3.9  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   6.8  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   9.0  

>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 237 TDVALRLVRDAATVHRVVQDLVRFDVTEFRNQH 335
           T + L L     ++++ +QD +R +VTE  N++
Sbjct: 303 TSITLALTCYELSLNKTIQDRLRHEVTEIYNEN 335


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -1

Query: 596 LDGLCTRLSQKLQSECIDFVDTYSSQLVEMLVADMNAKEICVFLKL 459
           L  +C  L   L SEC+D  ++    LV +LVA +   ++ +++++
Sbjct: 191 LKSVCADLC--LLSECVDLFNSLFGFLVLLLVA-LTTLQLLIYIQV 233


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 8/41 (19%)
 Frame = -3

Query: 456 SGPTARSPQADPLVHRQV--------PREADIERRQEQPQE 358
           +G    SP+ + L+HR V        P E D++R   QP +
Sbjct: 306 NGSKGISPEQEELIHRLVYFQNEYEHPSEEDVKRIINQPMD 346


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 297 DPGRHGERSPRLAQVSEQR 241
           DPGR    SPR++  S  +
Sbjct: 61  DPGRKSPSSPRISSPSSTK 79


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 582 HAALPETAERVHRLRGHVLESARRDAGGR 496
           HA  P  A  V+    HV+  A  D G R
Sbjct: 47  HAMHPYHANHVNPTANHVMGGAVPDVGKR 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,987
Number of Sequences: 336
Number of extensions: 2570
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)