Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_O07
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 34 0.021
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 30 0.26
SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr ... 29 0.79
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 29 0.79
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 28 1.4
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 27 2.4
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ... 27 3.2
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 27 3.2
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 26 4.2
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 26 4.2
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 26 5.6
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 26 5.6
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 25 7.4
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 25 7.4
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 9.7
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 25 9.7
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 9.7
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 33.9 bits (74), Expect = 0.021
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 270 ATVHRVVQDLVRFDVTEFRNQHVFGQKRLLPVVVPVASQ--CRLRVELVYGRVGQLEGIV 443
A+ +R+V + DVTE R HV GQ P + SQ C V + G++G + ++
Sbjct: 388 ASEYRIVMSCIVGDVTEKRALHVQGQSYWAPANIGPYSQSICANGVVFISGQIGLIPSVM 447
Query: 444 QL 449
+L
Sbjct: 448 EL 449
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 30.3 bits (65), Expect = 0.26
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 468 PEAVSGPTARSPQADPLVHRQVPREADIERRQEQPQEEV 352
PE G A+ P+ P + P+E E +E+ +EE+
Sbjct: 108 PEEKEGKEAKEPEEPPKEEAEEPQEGGEEEEEEEEEEEI 146
>SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 147
Score = 28.7 bits (61), Expect = 0.79
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 404 FHAKPTLR-GDRNNHRKKSLLPKHMLVSEFSDVETNEILDDT 282
+H+ R + +N+R SL+ K M VSE E I+DD+
Sbjct: 25 YHSDGLARYANNSNYRNDSLIRKEMFVSELVLKEVQRIVDDS 66
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 28.7 bits (61), Expect = 0.79
Identities = 22/112 (19%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Frame = -1
Query: 599 ALDGLCTRLSQKLQSECIDFVDTYSSQLVEMLVADMNAKEICVFLKLCRDQLHD--PLKL 426
+L ++++++++ + + Y S++ L +D + + RD + L+
Sbjct: 270 SLSSSSSQITKEIRDINFNCIGPYLSKIARKLSSDFEGRRQAKTVNQIRDFVSKLGSLQS 329
Query: 425 THSSIDKFH---AKPTLRGDRNNHRKKSLLPKHMLVSEFSDVETNEILDDTV 279
H+S++ H A+ ++ +NN+ +K L +H+LVS +LD+ +
Sbjct: 330 EHTSLN-IHTGLAETLVQHTKNNYFQKLLQLQHLLVSHADSFTQFNLLDEII 380
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -1
Query: 587 LCTRLSQKLQSECIDFVDTYSSQLVEMLVADMNAKEICVFLKLCRD--QLHDPLKLTHSS 414
L T +S +++ +D T LV+D NA IC LCR + D H+
Sbjct: 1420 LFTNISPEIKELSVDSTSTLGGLNSSHLVSDQNASVIC----LCRQPFAISDGTVQCHNC 1475
Query: 413 IDKFH 399
++ FH
Sbjct: 1476 LEWFH 1480
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -3
Query: 516 RRDAGGRHEREGDLR-VPEAVSGPTARSPQADPLVHRQVPREADIERRQEQPQEEVASAQ 340
++ A R ++ D VP + + S + DP ++ PRE + ++ +QP+ + Q
Sbjct: 24 KKTAASRDKKRSDSPPVPRELVAQSTTSRKRDP--NQPTPRERTVNKKADQPRRRRQAPQ 81
Query: 339 THAGF 325
+ F
Sbjct: 82 GNEAF 86
>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 265 TRRPFTVSSRISFVSTSLNSETSMCLGRSDFFLWLFLSPLNV 390
T +P+T S +S T L S +CL RSD F + + L++
Sbjct: 347 TGQPWT--STLSVTQTDLASVLEICLQRSDPFTKIIIDELSI 386
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 26.6 bits (56), Expect = 3.2
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = -3
Query: 543 LRGHVLESARRDAGGRHEREGDLRVPEAVSGPTARSPQADPL 418
L G VL RRDA R GD+ +SG A+ ADPL
Sbjct: 168 LEGSVLVE-RRDAN-RSLYRGDITAKRLLSGQVAQPAAADPL 207
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 422 HSSIDKFHAKPTLRGDRNNHRKKS 351
HSS + H++ + R DRNN R+++
Sbjct: 193 HSSDKREHSRRSYRNDRNNWRERT 216
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = -3
Query: 606 SQGSGRSLHAALPETAERVHRLRGHVLESARRDAGGRHER 487
+ G G + H +LP +L G++L+ + +GG ++
Sbjct: 268 ASGYGSASHKSLPNLFYNPEKLLGYILQCCQSTSGGLRDK 307
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 230 CEFVLKEIDDQIKDKHNDDEIKKAVHGICK 141
CE LKEI+ ++K N ++I K + + +
Sbjct: 30 CEATLKEIEQRLKSIKNIEKITKTIKTVAQ 59
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 25.8 bits (54), Expect = 5.6
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Frame = +3
Query: 237 TDVALRLVRDAATVHRVVQDLVRFDVTEFRNQH--VFGQKRLLPVVVPVASQCRLRVELV 410
T VA + A H+ V++ ++ VT+ + ++ V + P ++ + L
Sbjct: 556 TKVAHTSLEGNAASHKKVEENMQQPVTKKQKKYRMVNEEAHTGPTIIIPSDNNEKVTTLP 615
Query: 411 YGRVGQLEG--IVQLVPTQLQEHADLLRVHVGHQHLDELTRVRVHEVDALALQFL 569
G V E + L +LQ +LR V H+ +DE + ++ QFL
Sbjct: 616 AGHVPSEEKGKFINLAMHELQNEVSILRSSVNHREVDEAIDNILRYTNSTEQQFL 670
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 370 FLSPLNVGFAWNLS-MDEWVSLRGSCSWSRHSFRNTQ 477
F++PLN+ FA++ + +++ + C++S SF N +
Sbjct: 412 FINPLNIRFAYSFNDINQACVIEERCNFSSLSFGNLE 448
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 49 GPILVARXALTKSAYFSTNWSHSALT 126
G +L R L K++ F T W+ ALT
Sbjct: 372 GAVLAFRFRLKKASQFDTRWNLFALT 397
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.0 bits (52), Expect = 9.7
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -1
Query: 563 LQSECIDFVDTYSSQLVEMLVADM--NAKEICVFLKLCRDQLHDPLKLTHSSIDK 405
++SE F S +LVE+LVAD+ + KE +FL+ +++ +S+ DK
Sbjct: 836 MESERTYFNKESSQELVELLVADLGDDFKEPHLFLRSRLNEITVYKAFLYSNTDK 890
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 302 NEILDDTVNGRRVSHKSQSNVCVLCEFV 219
N+I + +NG RV K + + C +FV
Sbjct: 452 NKIKQEILNGERVDEKKERDGCDALDFV 479
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 9.7
Identities = 19/78 (24%), Positives = 39/78 (50%)
Frame = -1
Query: 638 VLKNNRSEENIRKALDGLCTRLSQKLQSECIDFVDTYSSQLVEMLVADMNAKEICVFLKL 459
VLK +++ + L+ L T + + QSE ++ V + +L ++L++ A LKL
Sbjct: 421 VLKLTEEIQDL-ETLNQLNTEIEAR-QSEKLNEVQEETQRLSQLLISSQPALTEVKHLKL 478
Query: 458 CRDQLHDPLKLTHSSIDK 405
C + L ++ ++K
Sbjct: 479 CLSDSQEELLQLNAKLEK 496
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,839
Number of Sequences: 5004
Number of extensions: 45302
Number of successful extensions: 215
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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