Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O07
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.49 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.6  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   7.9  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   7.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = -3

Query: 516 RRDAGGRHEREGDLRVPEAVSGPTARSPQADPLVHRQVPREADIERRQEQPQEEVASAQT 337
           RR A       GD  +  A    T + PQ         P ++ IE   E+P +  +S+ +
Sbjct: 539 RRRANSGSTSSGDDELHRASLSKTPQPPQCPRFRKLDSPSDSGIESGTEKPDKPASSSAS 598

Query: 336 HA 331
            A
Sbjct: 599 SA 600


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -3

Query: 450  PTARSPQADPLVHRQVPREADIERRQEQPQEEVASAQTHAGF*IQ*RRN-ERDPGRHGER 274
            P  +S Q  P   +  P++   +++Q+QPQ++       +G  +Q +R       R GE+
Sbjct: 1517 PQQQSQQ--PQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSGLVVQLQRGYNSGNNRSGEQ 1574

Query: 273  SPRLAQVSEQ 244
            +    Q  +Q
Sbjct: 1575 ANSQQQQQQQ 1584



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -3

Query: 411  RQVPREADIERRQEQPQEEVASAQ 340
            +Q P++   +++Q+QPQ++    Q
Sbjct: 1502 QQQPQQQQQQQQQQQPQQQSQQPQ 1525


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
 Frame = -3

Query: 438 SPQADPLVHRQV--------PREADIERRQEQPQE 358
           SP+ + L+HR V        P E D++R   QP E
Sbjct: 332 SPEQEELIHRLVYFQNEYEQPSEEDLKRITNQPSE 366


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 91  YFSTNWSHSALTDFGMC 141
           Y++TN SH+ L+  G C
Sbjct: 126 YYTTNESHACLSTGGSC 142


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 296 ILDDTVNGRRVSHKSQSNVCVL 231
           +LD T+N ++   +    VCVL
Sbjct: 18  MLDHTINSKKTIMRILKEVCVL 39


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 296 ILDDTVNGRRVSHKSQSNVCVL 231
           +LD T+N ++   +    VCVL
Sbjct: 1   MLDHTINSKKTIMRILKEVCVL 22


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -3

Query: 453 GPTARSPQADPLVHRQVPREADIERRQEQPQE 358
           G     P + PLV  Q+  +   +    QPQ+
Sbjct: 152 GSVLDGPDSPPLVESQMHHQMHTQHPHMQPQQ 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,924
Number of Sequences: 438
Number of extensions: 3278
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)