Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O05
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0836 - 25249491-25249511,25249883-25250050,25250721-252509...    30   2.0  
05_07_0236 - 28582157-28582552,28582639-28582911,28583324-285835...    30   2.0  

>06_03_0836 -
           25249491-25249511,25249883-25250050,25250721-25250920,
           25251000-25251324,25251981-25252045,25252231-25252552,
           25252650-25252730
          Length = 393

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -1

Query: 347 GQVTFLSPHDRSEGDYGVFRFD-SYSFSNDTFHNVLNGCTKTW 222
           G   FL+ HD SEG+  +FR++ +  F+ + F  + NGC K +
Sbjct: 204 GWAPFLAAHDLSEGNILLFRYEGNMVFTVEVF--LQNGCLKEY 244


>05_07_0236 -
           28582157-28582552,28582639-28582911,28583324-28583560,
           28583653-28583694,28583782-28583964,28584393-28584524,
           28585605-28586057
          Length = 571

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 275 NMSQIGIHHNLLHCGHAAIGMLLGRP 352
           N  Q+ IHH+ L CG+A I  +  +P
Sbjct: 326 NSKQVSIHHSNLACGNALINSIKAKP 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,069,209
Number of Sequences: 37544
Number of extensions: 316103
Number of successful extensions: 646
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)