Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O05
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.6  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   2.7  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   2.7  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   2.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.4  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 552 RLLTFLQATARVGFGDDTAPDDVLEC 629
           RL T LQAT   G   +  P DV EC
Sbjct: 131 RLNTRLQATLNCGLRLEKFPFDVQEC 156


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 26  SPAAAMFQSWPSQNSFSHQCLNLKQMLYILYST 124
           SP  A +  WP +      C   ++  Y++YS+
Sbjct: 169 SPPLAGWNDWPEELEPGTPCQLTRRQGYVIYSS 201


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 26  SPAAAMFQSWPSQNSFSHQCLNLKQMLYILYST 124
           SP  A +  WP +      C   ++  Y++YS+
Sbjct: 169 SPPLAGWNDWPEELEPGTPCQLTRRQGYVIYSS 201


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 26  SPAAAMFQSWPSQNSFSHQCLNLKQMLYILYST 124
           SP  A +  WP +      C   ++  Y++YS+
Sbjct: 169 SPPLAGWNDWPEELEPGTPCQLTRRQGYVIYSS 201


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 319 SCGDRNVTWPTRL 357
           S  + N+TWP RL
Sbjct: 389 SVNESNITWPGRL 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,720
Number of Sequences: 438
Number of extensions: 3757
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)