Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O04
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        26   2.6  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    25   6.1  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.1  

>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +3

Query: 207 ILYEIINRACYKYTLKSVKFY-RKKNIY 287
           IL  + NRA +K+ L+++KF+ +++ IY
Sbjct: 196 ILQLVPNRAVFKHALRAIKFWAQRRAIY 223


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 207 ILYEIINRACYKYTLKSVKFYRKKNIY 287
           + +  +N+AC    LKS+ F RK N +
Sbjct: 561 LTHSFLNQACPTEDLKSIIFSRKANTH 587


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 45  SCKSLFLHSEEPSAA 1
           SCK++ +HSE+PS A
Sbjct: 561 SCKAIDIHSEKPSFA 575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,487,472
Number of Sequences: 5004
Number of extensions: 26670
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)