Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O04
         (410 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10165| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)        27   4.5  

>SB_10165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 225 NRACYKYTLKSVKFYRKKNIYRIYSYHYARTSCSIF*RALWTLNYLFTIT 374
           NR  Y Y  +S ++YR   +Y   S+ Y RT+  I  +A  ++N +  +T
Sbjct: 52  NRYSYVYYRQSHEYYRYSYVYYRLSHEYYRTATCISDKAT-SINDIMCMT 100


>SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)
          Length = 1500

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +3

Query: 222 INRACYKYTLKSVKFYRKKNIYRIYSYHYARTSCSIF*RALWTLNYLFTITTQYS 386
           + R  Y+Y   +    R++++YR+   +Y  T  S+  R+++ L Y +   T  S
Sbjct: 590 VYRLLYEYYQATDTSVRERSVYRLLYEYYQATDTSVRERSVYRLLYEYYQATDTS 644



 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +3

Query: 222 INRACYKYTLKSVKFYRKKNIYRIYSYHYARTSCSIF*RALWTLNYLFTITTQYS 386
           + R  Y+Y   +    R++++YR+   +Y  T  S+  R+++ L Y +   T  S
Sbjct: 610 VYRLLYEYYQATDTSVRERSVYRLLYEYYQATDTSVRERSVYRLLYEYYQATDTS 664


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,988,853
Number of Sequences: 59808
Number of extensions: 168289
Number of successful extensions: 287
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)