Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O04
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64608-3|AAB04593.2|  349|Caenorhabditis elegans Serpentine rece...    28   3.0  
U29097-10|AAA68414.1|  348|Caenorhabditis elegans Serpentine rec...    27   4.0  
U41263-6|AAC24432.1|  338|Caenorhabditis elegans Serpentine rece...    27   5.3  
Z72508-1|CAA96641.1|  342|Caenorhabditis elegans Hypothetical pr...    26   9.2  
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p...    26   9.2  
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    26   9.2  
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    26   9.2  
U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.        26   9.2  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    26   9.2  

>U64608-3|AAB04593.2|  349|Caenorhabditis elegans Serpentine
           receptor, class v protein7 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 99  LNIIAK-SCSS*ITKF*YISIKTFNYNNLLVPCSVTYILYEIIN 227
           LNI+A  +C + I  + Y+ I  F  N   VP  V Y+LY++IN
Sbjct: 238 LNIVAALTCVAEIIYYCYV-IYVFGINTS-VPTRVFYLLYDVIN 279


>U29097-10|AAA68414.1|  348|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 29 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +3

Query: 150 ISIKTFNYNNLLVPCSVTYILYEIINRACYKYTLKSVKFYRKKNIYRIYSYHYARTSCSI 329
           ++++T  Y N+   C+   +L  I+N   ++ T+  +   R K +Y +    Y+   CSI
Sbjct: 42  LAVQTLWYKNVFPFCTKNLLLSAIVNGIFHQSTVAEI---RLKTVYHL--IRYSNAPCSI 96


>U41263-6|AAC24432.1|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 26 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 141 F*YISIKTFNYNNLLVPCSVTYILYEIINRACYKYTLKSVKFYRKKNIYR 290
           F Y+ +KT   NN+   C+   +++  IN   ++ T+  V   R + IYR
Sbjct: 44  FFYLVVKTLIKNNIFSNCTRALLIFCSINSIVHQTTMMEV---RIRQIYR 90


>Z72508-1|CAA96641.1|  342|Caenorhabditis elegans Hypothetical
           protein F28H7.1 protein.
          Length = 342

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 272 KKKHLQNLFLSLRPYKLFDILTSSMDLKLP 361
           KK  L N    L  + LF+ILTS MD+ +P
Sbjct: 33  KKLQLGNYRYLLLYFALFNILTSIMDMLVP 62


>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
           protein 2, isoform a protein.
          Length = 1538

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 278 FFSVKFNRF*CILVTSSVNDFI 213
           +F+ KFNRF C+++  S  + I
Sbjct: 448 YFASKFNRFDCVVIVGSAAEVI 469


>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
           protein 2, isoform c protein.
          Length = 1926

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 278 FFSVKFNRF*CILVTSSVNDFI 213
           +F+ KFNRF C+++  S  + I
Sbjct: 448 YFASKFNRFDCVVIVGSAAEVI 469


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
           protein 2, isoform b protein.
          Length = 2027

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 278 FFSVKFNRF*CILVTSSVNDFI 213
           +F+ KFNRF C+++  S  + I
Sbjct: 582 YFASKFNRFDCVVIVGSAAEVI 603


>U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.
          Length = 1053

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 278 FFSVKFNRF*CILVTSSVNDFI 213
           +F+ KFNRF C+++  S  + I
Sbjct: 69  YFASKFNRFDCVVIVGSAAEVI 90


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
           activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 278 FFSVKFNRF*CILVTSSVNDFI 213
           +F+ KFNRF C+++  S  + I
Sbjct: 582 YFASKFNRFDCVVIVGSAAEVI 603


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,901,458
Number of Sequences: 27780
Number of extensions: 139153
Number of successful extensions: 312
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)