Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O01
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    25   9.0  
SPAC664.12c |||LYR family protein|Schizosaccharomyces pombe|chr ...    25   9.0  

>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 254 IFYISHLSSFHTIF 295
           +F+ISHL SFH +F
Sbjct: 170 LFHISHLISFHFLF 183


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 523 FXDLFIVYIVGYITYIFFMYDIYTVLG 443
           F  +  +  + Y +Y F +  +YT+LG
Sbjct: 348 FITIGAIATIFYFSYFFILIPVYTILG 374


>SPAC664.12c |||LYR family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 79

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 329 FFYVIHLMKL*QK*YEMNSNVKCK 258
           FFY+ HL+++ Q+ YE  S  + K
Sbjct: 51  FFYIEHLLRVGQRQYEAYSRPEVK 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,631,586
Number of Sequences: 5004
Number of extensions: 24583
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)