Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O01
         (523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0169 - 21303270-21303731,21304863-21304996,21305384-21305630     28   5.2  
12_02_0384 + 18409831-18409843,18410378-18410471,18410614-184107...    27   6.9  

>09_06_0169 - 21303270-21303731,21304863-21304996,21305384-21305630
          Length = 280

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 161 YNYFM*HRILQYSFSSQFMKSYSFT*TTLV*IFYISHLSSF 283
           ++ F+ H  L  ++S+ F+K  +    TL+ +F +   SSF
Sbjct: 92  FSDFLYHTCLSLAYSAHFLKMMAIIVVTLILLFQVQSKSSF 132


>12_02_0384 +
           18409831-18409843,18410378-18410471,18410614-18410734,
           18411635-18412543,18412772-18413211,18413481-18414516
          Length = 870

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +2

Query: 161 YNYFM*HRILQYSFSSQFMKSYSFT*TTLV*IF----YISHLSSFHTIFAI 301
           Y Y   H    +SF + + K Y F   TLV I+    ++ H SSF T+  +
Sbjct: 400 YMYLPPHLKRCFSFCAVYPKDYRFEKDTLVDIWLAEGFVEHASSFPTVTVV 450


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,802,119
Number of Sequences: 37544
Number of extensions: 111586
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)