Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O01
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68749-1|CAA92960.2|  309|Caenorhabditis elegans Hypothetical pr...    31   0.66 
Z81587-1|CAB04701.1|  340|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AC006673-11|AAF39920.1|  311|Caenorhabditis elegans Hypothetical...    27   6.2  

>Z68749-1|CAA92960.2|  309|Caenorhabditis elegans Hypothetical
           protein F56H11.3 protein.
          Length = 309

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 407 FXCASPFYMLR*SFVLTNSYFCLCFFFFYVIHLMK 303
           + C +P ++L  +F L++SYF L   FF+  +L +
Sbjct: 261 YTCDTPMFVLHSTFALSSSYFVLFANFFHKAYLQR 295


>Z81587-1|CAB04701.1|  340|Caenorhabditis elegans Hypothetical
           protein T06G6.1 protein.
          Length = 340

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +1

Query: 142 SNNISIIQLFYVTSDITILIFKSVYEVL*FHVNNISLNILHFTFEFISYYFCYN 303
           +N  S   +F +T D  I  +KS Y  +  +   ISL +L F    +S+Y  Y+
Sbjct: 119 TNYFSTYSVFSLTFDRLISHYKSKYYHMHQYFIAISLLVLQFLLAILSFYIAYH 172


>AC006673-11|AAF39920.1|  311|Caenorhabditis elegans Hypothetical
           protein K09D9.3 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 250 LNILHFTFEFISYYFCYNFI 309
           L  +H  FE IS+ FCYN +
Sbjct: 22  LQTVHPPFEIISFLFCYNVV 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,864,091
Number of Sequences: 27780
Number of extensions: 133930
Number of successful extensions: 271
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)