Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_N23
(705 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 289 1e-78
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 289 1e-78
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 288 3e-78
SB_56| Best HMM Match : Actin (HMM E-Value=0) 288 3e-78
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 288 3e-78
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 287 5e-78
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 256 1e-68
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 8e-22
SB_54| Best HMM Match : Actin (HMM E-Value=0) 87 1e-17
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 86 3e-17
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 68 9e-12
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 38 0.006
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 36 0.042
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 32 0.52
SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 4.9
SB_7681| Best HMM Match : Annexin (HMM E-Value=0) 29 4.9
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 28 6.4
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_10094| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_45720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85) 28 8.5
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 289 bits (710), Expect = 1e-78
Identities = 133/144 (92%), Positives = 140/144 (97%)
Frame = -3
Query: 703 ASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRK 524
+S+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRK
Sbjct: 195 SSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRK 254
Query: 523 DLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 344
DLYANTV+SGGTTMYPGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLST
Sbjct: 255 DLYANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLST 314
Query: 343 FQQMWISKEEYDESGPGIVHRKCF 272
FQQMWISK+EYDESGP IVHRKCF
Sbjct: 315 FQQMWISKQEYDESGPAIVHRKCF 338
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 289 bits (709), Expect = 1e-78
Identities = 133/144 (92%), Positives = 140/144 (97%)
Frame = -3
Query: 703 ASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRK 524
+S+S+EKSYELPDGQVITIGNERFRCPEAL QPSFLGMES GIHET YNSIMKCDVDIRK
Sbjct: 206 SSSSIEKSYELPDGQVITIGNERFRCPEALLQPSFLGMESSGIHETTYNSIMKCDVDIRK 265
Query: 523 DLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 344
DLYANTVMSGGTTMYPG+ADRMQKEI+ALAPST+KIKIIAPPERKYSVWIGGSILASLST
Sbjct: 266 DLYANTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLST 325
Query: 343 FQQMWISKEEYDESGPGIVHRKCF 272
FQQMWISK+EYDESGP IVHRKCF
Sbjct: 326 FQQMWISKQEYDESGPAIVHRKCF 349
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 288 bits (707), Expect = 3e-78
Identities = 132/144 (91%), Positives = 140/144 (97%)
Frame = -3
Query: 703 ASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRK 524
+S+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRK
Sbjct: 233 SSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRK 292
Query: 523 DLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 344
DLYANTV+SGG+TMYPGIADRMQKEIT+LAP T+KIKIIAPPERKYSVWIGGSILASLST
Sbjct: 293 DLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLST 352
Query: 343 FQQMWISKEEYDESGPGIVHRKCF 272
FQQMWISK+EYDESGP IVHRKCF
Sbjct: 353 FQQMWISKQEYDESGPSIVHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 288 bits (707), Expect = 3e-78
Identities = 132/144 (91%), Positives = 140/144 (97%)
Frame = -3
Query: 703 ASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRK 524
+S+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRK
Sbjct: 232 SSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRK 291
Query: 523 DLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 344
DLYANTV+SGG+TMYPGIADRMQKEIT+LAP T+KIKIIAPPERKYSVWIGGSILASLST
Sbjct: 292 DLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLST 351
Query: 343 FQQMWISKEEYDESGPGIVHRKCF 272
FQQMWISK+EYDESGP IVHRKCF
Sbjct: 352 FQQMWISKQEYDESGPSIVHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 288 bits (706), Expect = 3e-78
Identities = 132/144 (91%), Positives = 140/144 (97%)
Frame = -3
Query: 703 ASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRK 524
+S+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRK
Sbjct: 233 SSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRK 292
Query: 523 DLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 344
DLYANTV+SGG+TMYPGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLST
Sbjct: 293 DLYANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLST 352
Query: 343 FQQMWISKEEYDESGPGIVHRKCF 272
FQQMWISK+EYDESGP IVHRKCF
Sbjct: 353 FQQMWISKQEYDESGPSIVHRKCF 376
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 287 bits (705), Expect = 5e-78
Identities = 132/144 (91%), Positives = 140/144 (97%)
Frame = -3
Query: 703 ASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRK 524
AS+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRK
Sbjct: 232 ASSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRK 291
Query: 523 DLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 344
DLYANTV+SGG+TM+PGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLST
Sbjct: 292 DLYANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLST 351
Query: 343 FQQMWISKEEYDESGPGIVHRKCF 272
FQQMWISK+EYDESGP IVHRKCF
Sbjct: 352 FQQMWISKQEYDESGPSIVHRKCF 375
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 256 bits (627), Expect = 1e-68
Identities = 115/143 (80%), Positives = 131/143 (91%)
Frame = -3
Query: 700 STSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKD 521
S LEK+YELPDGQVI+IGNERFRCPEA+FQP+FLGME+ GIHE +YN IMKCDVDIRKD
Sbjct: 7 SPILEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIRKD 66
Query: 520 LYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTF 341
LY+N V+SGG+TM+PGIADRMQKEI LA +++K+K+IAPPERKYSVWIGGSILASLSTF
Sbjct: 67 LYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTF 126
Query: 340 QQMWISKEEYDESGPGIVHRKCF 272
QQMWI+KEEY E GP IVHRKCF
Sbjct: 127 QQMWIAKEEYHEYGPPIVHRKCF 149
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 101 bits (241), Expect = 8e-22
Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 29/163 (17%)
Frame = -3
Query: 700 STSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKD 521
+T L + Y LPDG+V+ + ERF PEALFQP + +E G+ E ++N+I D+D R +
Sbjct: 237 TTVLVEQYTLPDGRVVKLSGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSE 296
Query: 520 LYANTVMSGGTTMYPGIADRMQKEITAL---------------------APSTI-----K 419
Y + V+SGG+TMYPG+ R+++EI L P T K
Sbjct: 297 FYKHIVLSGGSTMYPGLPSRLEREIKQLYLERVLKGDTSKLSSGMGMEQIPLTADYLLQK 356
Query: 418 IKI-IAPP-ERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 299
KI I P RK+ V++GG++LA + W++++EY+E G
Sbjct: 357 FKIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 87.0 bits (206), Expect = 1e-17
Identities = 39/69 (56%), Positives = 49/69 (71%)
Frame = -3
Query: 700 STSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKD 521
S E Y LPDGQ I IG+ERFR E LFQPS LG + GIHE+++ SI KCD+D+R +
Sbjct: 2278 SDDCEAPYMLPDGQSIRIGSERFRAAEPLFQPSLLGRDIDGIHESIFKSIKKCDIDLRAE 2337
Query: 520 LYANTVMSG 494
L+ N V+SG
Sbjct: 2338 LFHNIVLSG 2346
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 85.8 bits (203), Expect = 3e-17
Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 17/145 (11%)
Frame = -3
Query: 655 ITIGNERFRCPEALFQPSFLGME-SCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMY 479
+ + ERF PE F P F + + + E V N I C +D+R+ LY N V+SGG+TM+
Sbjct: 196 VDVAYERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRPLYKNIVLSGGSTMF 255
Query: 478 PGIADRMQKEIT----------------ALAPSTIKIKIIAPPERKYSVWIGGSILASLS 347
R+Q++I + P I+ ++I+ ++Y+VW GGS+LAS
Sbjct: 256 RDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQRYAVWFGGSMLASTP 315
Query: 346 TFQQMWISKEEYDESGPGIVHRKCF 272
F + +K +YDE GP I F
Sbjct: 316 EFYSVCHTKADYDEHGPSICRHNPF 340
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 67.7 bits (158), Expect = 9e-12
Identities = 29/85 (34%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Frame = -3
Query: 595 GMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKI 416
G + G+ + V S+ D+DIR L+ + +++GG T+ G +R+ +E+ + P ++++
Sbjct: 146 GSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRL 205
Query: 415 KII---APPERKYSVWIGGSILASL 350
K+I + E++++ WIGGSILASL
Sbjct: 206 KLISNNSSVEKRFNPWIGGSILASL 230
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 54.0 bits (124), Expect = 1e-07
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Frame = -3
Query: 589 ESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPST----- 425
E + + +S++ C +D RK L N V+ GGT M PG R+ +EI L S
Sbjct: 54 EEKSLATALLDSLLLCPIDTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDK 113
Query: 424 --IK-IKIIAPP-ERKYSVWIGGSILASLSTFQQMWISKEEYDE 305
IK +K+ PP + W+GG+I SL ++E Y +
Sbjct: 114 LFIKTVKMHQPPVNANITAWLGGAIFGSLEVLADRSTTRERYQQ 157
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = -3
Query: 577 IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPG 473
I E + +I K D+D+R+ LY+N V+SGG+T++ G
Sbjct: 257 IIEVLAFAIQKSDLDLRRVLYSNIVLSGGSTLFKG 291
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 35.5 bits (78), Expect = 0.042
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = -3
Query: 691 LEKSYELPDGQVITIGNERFRCPEALFQPSFL 596
L K Y LPDGQ+I+IG E E LF+P L
Sbjct: 867 LTKFYTLPDGQMISIGYECISSMEPLFRPDLL 898
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -3
Query: 625 PEALFQPSFLGMESCGIHETV 563
PE +FQPS LG+E GI ET+
Sbjct: 3 PEIIFQPSMLGLEQAGITETM 23
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 31.9 bits (69), Expect = 0.52
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = -2
Query: 581 RHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHRS 402
R P+DR + HH RR H +HR H R++R+ +G+ L+ +D
Sbjct: 830 RPPQDRHRRHHHRRRHHN----NKHRKHSREHSRRRHQRKHHKGNDAQETLEEIFED--D 883
Query: 401 PREEVLRMDRWIHPG 357
R+E +D +++ G
Sbjct: 884 ARDEKENVDEFVNGG 898
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = -2
Query: 605 FLPGYGIVRHP-RDRVQLHHEV-RRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRA 432
F+ G G++ H + Q+ E R + G +HRH R +HH ++ R+ + + A
Sbjct: 894 FVNGGGMMEHELQSDSQISQETGARENDPGKKHKHRHRRHHHHRRQHNRKIKKHRRKHSA 953
Query: 431 LDHQ 420
H+
Sbjct: 954 RKHE 957
>SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1916
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 616 EPRDNGTSRYRW*SPDRQEVRXTSRGRWRR 705
E R NG R R+ PD +VR + WRR
Sbjct: 711 ERRHNGRDRRRYGQPDSGDVRQSRTASWRR 740
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 363 MDPPIHTEYFLSGGAMILILMVEGARAVISFCILSAIPGYMV-VPPD 500
+DPP+ +Y L+GG ++ ++ FCI G++V PP+
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCIFQ---GFVVPTPPE 801
>SB_7681| Best HMM Match : Annexin (HMM E-Value=0)
Length = 426
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Frame = -2
Query: 578 HPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDH--R 405
HP ++ HHE R P H H P ++ E P DH++++
Sbjct: 316 HPPEQ---HHEEEERGVHPPGEHHEEEERGAHPPGQDLEEEERGAHPPGQDHEEEERGAH 372
Query: 404 SPREEVLRMDRWIHP 360
P + +R +HP
Sbjct: 373 PPEQHHEEEERGVHP 387
>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 598 GRKAGREPRDNGTSRYRW*SPDRQEVRXTSRGRWRR 705
GR +GR+ RD G R W R R + R RW R
Sbjct: 604 GRDSGRDGRDTG--RESWRDGARDSGRDSERKRWPR 637
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 511 NTVMSGGTTMYPGIADRMQKEITALAP 431
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Frame = -2
Query: 581 RHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYR--RQDAEGDHRPR--ALDHQDQ 414
RH R R + R RH RH H R++ R + R R H+
Sbjct: 23 RHERSRHETRQHERSRHKTSRHESSRHKTSRHERSRHKTSRHETSRHERSRHETRQHERS 82
Query: 413 DHRSPREEVLRMDRWIH 363
H++ R E R ++ H
Sbjct: 83 RHKTSRHETSRHEKSRH 99
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = -2
Query: 626 SRGSLPAFLPGYGIVRHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 447
+R ++P LPG H R R HH ++H ++ HH Q +
Sbjct: 930 ARPNMPGTLPGNYPESHKRHRHSHHHH------------YQHYQYNHHHDHQSHQHHDSH 977
Query: 446 HRPRALDHQ 420
H LDH+
Sbjct: 978 HHREVLDHK 986
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 28.3 bits (60), Expect = 6.4
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Frame = -2
Query: 584 VRHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVP-RYRRQDAEGDHRPRALDHQDQD- 411
V HPR V +H HP V HR +H + RQDA DH + + H QD
Sbjct: 606 VVHPRRDV-VHPRQDVVHPRQDVDHHRQDVDHHRQDVDHHRQDA--DHHRQDVVHPRQDV 662
Query: 410 -HRSPREEVLRMDRWIHPGFPVHLPADVD 327
HR + R D H VH D D
Sbjct: 663 VHRRQDADHRRQDADHHRQDVVHPRQDAD 691
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = -2
Query: 575 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHR 405
PRDR + E RRR P R+ R + Y PR RR+ R R D R
Sbjct: 854 PRDRRRRSPEHRRRREASPPRRDR--KRYDSPPRRRRRSPSPPPRRRRRDSYSPSRR 908
>SB_10094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 514 ANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPE 395
AN V+ + + +R+ KE+ L +K KIIAPPE
Sbjct: 44 ANPVIHPARKVPVSLGERLDKELNRLTELGIVKEKIIAPPE 84
>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/73 (24%), Positives = 27/73 (36%)
Frame = -2
Query: 581 RHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHRS 402
RH R R + R RH RH H R++ E R+ H+ + H
Sbjct: 63 RHERSRHETRQHERSRHKTSRHESSRHKTSRHGRSRHKTSRHETSRHERS-RHETRQHER 121
Query: 401 PREEVLRMDRWIH 363
R + R ++ H
Sbjct: 122 SRHKTSRHEKSRH 134
>SB_45720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Frame = -2
Query: 554 HHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDH--RSPREEVLR 381
HHE R P + H H P ++ E P H++++ P E
Sbjct: 154 HHEEEERGVHPPGQHHEEEERGVHPPGQHHEEEERGVHPPGQHHEEEERGVHPPEEHHEE 213
Query: 380 MDRWIHP 360
+R +HP
Sbjct: 214 EERGVHP 220
>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
Length = 647
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = -2
Query: 584 VRHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHR 405
++HP ++ H + ++ P + HHVP + +A G+ R Q+ D+
Sbjct: 550 IQHPVEKAIQHAQEKKYQP----ELEKKTIKSHHVPGQDKTEARGEERIAVWSTQNGDYY 605
Query: 404 SPREE 390
R+E
Sbjct: 606 DQRDE 610
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,028,429
Number of Sequences: 59808
Number of extensions: 439232
Number of successful extensions: 1529
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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