Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_N21
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    29   1.1  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    28   1.5  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    27   4.4  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   5.9  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    26   7.8  
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    26   7.8  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    26   7.8  

>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 605 SKMDTLVQHSVHVIQKNFLQHHTTNVSCVFYHLVGSRI 718
           SK +TLV H   V+   +LQ   ++VS V YHL   R+
Sbjct: 141 SKKETLVAHHSSVLW--YLQSELSDVSSVLYHLQDLRL 176


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 594 FSFVQKWTPWSNILSTLFKKIFS 662
           F  +  WTPW NI + + K+I+S
Sbjct: 745 FLGISIWTPWRNIFARMPKRIYS 767


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 572 VQKRCLTIFICSKMDTLVQHSVHVIQKNFLQHHTTNVSCVF 694
           +QK C      S M+  V+ + H+++ NF Q  TT V+  F
Sbjct: 532 IQKTCTNEEDVSVMEMFVKFNTHLLKTNFFQ--TTKVALSF 570


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -1

Query: 811 WCLQKCGKIVM*PSYED*SNLWNELYFYTAQNPGPYEMVKNTGHVCSVVLEKI 653
           +C+++  +IV  PSYED  +LW+ L    + + G  E+ K     C + L K+
Sbjct: 451 YCIERL-QIVS-PSYEDIISLWSSLMIIISSSLGSDEIYK----ACLLFLRKL 497


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 598 HLFKNGHLGPTFCPRYSKKFSPAPHYKRVLCFL 696
           H+     L P +CP    K +  PH  R L +L
Sbjct: 282 HMLAGDILSPRYCPSLEAKVTRFPHKARHLIWL 314


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +2

Query: 422 DNLLQP*PVHLVGDLLCGHTLYTLGCTTKHSIERFHLRHLSKKARIKDHTVQKRCLTIFI 601
           + L+Q  P H  GD+       T+  T +    R  +  + +K R++ H +   CLT  +
Sbjct: 45  ERLIQERPTHDFGDVEA-----TVDRTVEKR-SRLKITSVDRKIRLQIHQLHLLCLTYHL 98

Query: 602 CSK 610
           C++
Sbjct: 99  CTR 101


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -1

Query: 751 LWNELYFYTAQNPGPYEMVKNTGHVC--SVVLEKIFLNNVDR 632
           LW+    Y ++    Y  +KN G  C  + +L+ +F  N+ R
Sbjct: 214 LWHSFVNYNSKKETGYVGLKNQGATCYMNSLLQSLFFTNIFR 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,766,998
Number of Sequences: 5004
Number of extensions: 83386
Number of successful extensions: 217
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)