Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_N21
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0105 + 12922828-12923448,12923554-12923907,12924008-129243...    32   0.50 
03_01_0171 + 1399378-1400349                                           30   2.7  
12_01_1073 + 11135853-11137388,11137627-11137846,11137990-111381...    29   3.5  
05_04_0066 + 17621532-17621619,17621658-17621820,17621864-176222...    29   4.7  
08_01_0069 - 483701-483997,484113-484325,484548-484727,484815-48...    28   8.2  
02_04_0511 - 23560398-23560457,23560638-23560708,23560852-23561182     28   8.2  

>10_07_0105 +
           12922828-12923448,12923554-12923907,12924008-12924330,
           12928324-12928401,12928760-12928883
          Length = 499

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 513 ECLVVQPRV*SVWPHNKSPT-RCTGQGCNRLSSTYKDRRAAGKQDNHSAKS 364
           E LV QP + S WPH +  T +     C++L S Y  +R  GK D   AK+
Sbjct: 421 ESLVQQPAIMSYWPHKEPYTMKVNFCICDQLRSVYNLKR--GKCDEEKAKN 469


>03_01_0171 + 1399378-1400349
          Length = 323

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 502 HQALNRKIPPQALVQKSQDKRPHCAE-EVLDYFHLFKNGHLGPTFCPRYSKKFSPAPHYK 678
           H AL+ K  P +L+  S   R H    E+++   L    HLG +F  R+ K  + AP +K
Sbjct: 32  HAALHSK--PHSLLVSSSVSRAHATRWELMEVGSL---QHLGDSFSYRWLKHAAQAPSFK 86

Query: 679 RVL 687
           R++
Sbjct: 87  RLV 89


>12_01_1073 +
           11135853-11137388,11137627-11137846,11137990-11138178,
           11138257-11138457,11138547-11139246,11163479-11164106
          Length = 1157

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 468 NKSPTRCTGQGCNRLSSTYKDRRAAGKQDNHSAKSVAMKE 349
           N + + C+ + C RL      RRA GK  + SAK+   KE
Sbjct: 666 NSNKSNCSERHCRRLKLENIWRRAIGKCQSRSAKNFLRKE 705


>05_04_0066 +
           17621532-17621619,17621658-17621820,17621864-17622233,
           17622548-17623009
          Length = 360

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 246 YKSSGVDKQSSKFNDHTLRHCAMLKNS 326
           Y    ++K+S  F+DH+LR+  +L NS
Sbjct: 205 YNEDELEKKSKLFSDHSLRYLFLLNNS 231


>08_01_0069 -
           483701-483997,484113-484325,484548-484727,484815-484985,
           485655-485764,485914-485989
          Length = 348

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = +1

Query: 613 GHLGPTFCPRYSKKFSPAPHYKRVLCFLPSRRVQDFVLYKNRVHSIDLTNLHSLVT 780
           G+L   F   YSK    AP YK +   L   R    ++   R+ S     L SLVT
Sbjct: 246 GNLPELFGDDYSKLVDDAPKYKGIFRKLSCLRAYAEMVRSRRIRSKAARRLDSLVT 301


>02_04_0511 - 23560398-23560457,23560638-23560708,23560852-23561182
          Length = 153

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 310 QCSKIVLELYTNTL-LHCYTLGRVVVLLSSCTSV 408
           Q   I+L LY N L LH Y   R+ +LL  C SV
Sbjct: 55  QTKLILLLLYDNNLQLHQYKSARLCLLLDGCISV 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,567,628
Number of Sequences: 37544
Number of extensions: 518944
Number of successful extensions: 1123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)