Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_N21
         (850 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.39 
SB_55416| Best HMM Match : D123 (HMM E-Value=0)                        29   3.6  
SB_13983| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_48529| Best HMM Match : NADH5_C (HMM E-Value=4.1)                   29   4.8  
SB_54944| Best HMM Match : Gal_Lectin (HMM E-Value=9.5e-05)            29   4.8  
SB_53857| Best HMM Match : DUF948 (HMM E-Value=5.2)                    28   8.3  
SB_10988| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1892

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 452  LVGDLLCGHTLYTLGCTTKHSIERF--HLRHLSKKARIKDHTVQKRCLT 592
            + G  + GHT+ T    T H++  F  H RHLS  A++  HTV    +T
Sbjct: 1174 VTGHTVTGHTV-TDHTVTIHAVNHFPGHTRHLSHSAQVAGHTVTGHTVT 1221


>SB_55416| Best HMM Match : D123 (HMM E-Value=0)
          Length = 329

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 332 NSTLTHSFIATLLAEWLSCFPAARLSLYVEDNLL 433
           NST TH     +L +W + +PA     +V +N L
Sbjct: 153 NSTQTHDSFELILRKWQNIYPAMEFRCFVRNNEL 186


>SB_13983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 230

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 10/23 (43%), Positives = 20/23 (86%)
 Frame = -1

Query: 709 PYEMVKNTGHVCSVVLEKIFLNN 641
           PY+ ++ TGH C++V+E++F+N+
Sbjct: 206 PYDYME-TGHKCALVIERLFVND 227


>SB_48529| Best HMM Match : NADH5_C (HMM E-Value=4.1)
          Length = 246

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 22/82 (26%), Positives = 39/82 (47%)
 Frame = -3

Query: 470 TTNLPQGVLVKAATDYPLHIKTDVQLESRTTTLPRV*Q*RSVLV*SSRTIFEHCTMPQSM 291
           TT +   ++V       L + T+V L+   TTL  +    + LV   +T+  H T+  ++
Sbjct: 54  TTLVTLELIVTTLVTLELIVTTNVTLKLTLTTLVTLELIVTTLVTIEKTVITHITLEMTV 113

Query: 290 VIKFTGLFINSTTLVVPKIICK 225
               T L +N  TL+  ++I K
Sbjct: 114 TTNVT-LKLNVKTLITLELILK 134


>SB_54944| Best HMM Match : Gal_Lectin (HMM E-Value=9.5e-05)
          Length = 392

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 478 HTLYPGLHHQALNRKIPPQALVQKSQDKRPHCAE 579
           H+ YP  H Q  + K PP+AL  K  +K     E
Sbjct: 108 HSCYPDCHAQCCDPKPPPRALYLKRAEKTATACE 141


>SB_53857| Best HMM Match : DUF948 (HMM E-Value=5.2)
          Length = 217

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +2

Query: 557 IKDHTVQKRCLTIFICSKMDTLVQHSVHVIQKNFL 661
           ++D   Q RC+ +      +  +QH +H  QK+++
Sbjct: 111 LEDELFQSRCVVLVYSDICEDYLQHDIHEFQKSYV 145


>SB_10988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +2

Query: 557 IKDHTVQKRCLTIFICSKMDTLVQHSVHVIQKNFL 661
           ++D   Q RC+ +      +  +QH +H  QK+++
Sbjct: 146 LEDELFQSRCVVLVYSDICEDYLQHDIHEFQKSYV 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,078,384
Number of Sequences: 59808
Number of extensions: 625814
Number of successful extensions: 1365
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)