Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_N21
(850 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr... 31 1.4
AC006790-8|AAF60730.1| 294|Caenorhabditis elegans Hypothetical ... 29 3.2
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 29 4.2
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 29 4.2
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 29 4.2
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr... 28 7.3
AC024843-5|AAK70666.3| 740|Caenorhabditis elegans Hypothetical ... 28 7.3
Z69384-8|CAM06585.1| 495|Caenorhabditis elegans Hypothetical pr... 28 9.6
Z69384-7|CAA93417.2| 502|Caenorhabditis elegans Hypothetical pr... 28 9.6
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 28 9.6
>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical
protein C27F2.8 protein.
Length = 1715
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 568 HCAEEVLDYFHLFKNGHLGPTFCPRYSKKFSP 663
H + ++D L ++GH+ P F +Y+KK P
Sbjct: 394 HFSVRLIDRTALIRSGHISPVFVLKYNKKLPP 425
>AC006790-8|AAF60730.1| 294|Caenorhabditis elegans Hypothetical
protein Y49F6B.3 protein.
Length = 294
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = -1
Query: 187 IQKLLFAKNKINAALEQRFRFFEGWSLTDLMLL 89
I+KL F KN N ++++ +FFEG+ ++ L ++
Sbjct: 119 IEKLCFRKNHQNYSIDEFKKFFEGFKVSCLSII 151
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 69 FNQLSQXSSIRSVNDQPSKNLNRCSKAAF 155
FN+L I +VN+ S +LN CSK AF
Sbjct: 368 FNKLPGRRCIEAVNECASPSLNDCSKNAF 396
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 69 FNQLSQXSSIRSVNDQPSKNLNRCSKAAF 155
FN+L I +VN+ S +LN CSK AF
Sbjct: 952 FNKLPGRRCIEAVNECASPSLNDCSKNAF 980
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 69 FNQLSQXSSIRSVNDQPSKNLNRCSKAAF 155
FN+L I +VN+ S +LN CSK AF
Sbjct: 368 FNKLPGRRCIEAVNECASPSLNDCSKNAF 396
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 69 FNQLSQXSSIRSVNDQPSKNLNRCSKAAF 155
FN+L I +VN+ S +LN CSK AF
Sbjct: 952 FNKLPGRRCIEAVNECASPSLNDCSKNAF 980
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 69 FNQLSQXSSIRSVNDQPSKNLNRCSKAAF 155
FN+L I +VN+ S +LN CSK AF
Sbjct: 952 FNKLPGRRCIEAVNECASPSLNDCSKNAF 980
>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical protein
R09H10.5 protein.
Length = 1603
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 278 TGLFINSTTLVVPKIICKESQ*TPYVSW 195
TG+F N+T LV + C TP ++W
Sbjct: 1486 TGIFTNATVLVRDPVNCASQFVTPLITW 1513
>AC024843-5|AAK70666.3| 740|Caenorhabditis elegans Hypothetical
protein Y61A9LA.8 protein.
Length = 740
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 560 KDHTVQKRCLTIFICSKMDTLVQHSVHVIQKNFLQHHTTNVSCVFYH 700
+DH V++RC+ C+K DT KNF + T + C+F H
Sbjct: 496 EDHHVKERCIFWPKCTKGDTCAFMHPTTNCKNF-PNCTFGIRCLFIH 541
>Z69384-8|CAM06585.1| 495|Caenorhabditis elegans Hypothetical
protein T11G6.2b protein.
Length = 495
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 291 HTLRHCAMLKNSSRTLH*HTPSLLHSWQS 377
HT AML + +TL PSL+H+W S
Sbjct: 34 HTFMSYAMLHATRKTLSTVKPSLIHTWIS 62
>Z69384-7|CAA93417.2| 502|Caenorhabditis elegans Hypothetical
protein T11G6.2a protein.
Length = 502
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 291 HTLRHCAMLKNSSRTLH*HTPSLLHSWQS 377
HT AML + +TL PSL+H+W S
Sbjct: 41 HTFMSYAMLHATRKTLSTVKPSLIHTWIS 69
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical
protein F13B9.1a protein.
Length = 1632
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 526 PPQALVQKSQDKRPHCAEEVLDYFHLFKNGHLGPTFCP 639
PP++++ K Q EE L+ + ++ NG L T CP
Sbjct: 841 PPKSIIAKRQSDMNSVCEESLNAYDIYNNGPLKFT-CP 877
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,038,906
Number of Sequences: 27780
Number of extensions: 483336
Number of successful extensions: 1193
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -