Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_N21
(850 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 23 3.6
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 4.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 4.7
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 22 6.2
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 6.2
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 22 8.2
AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. 22 8.2
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 8.2
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 22 8.2
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 23.0 bits (47), Expect = 3.6
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 204 IGCSLAFFTNYFRNYKSSGVDKQSSKFNDHTLRHCAMLKN-SSRTLH 341
+ CS +FF +F Y +++ D+ R+ +LKN +R +H
Sbjct: 417 LSCS-SFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLKNFPTRYIH 462
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = -2
Query: 693 KTQDTFVVWCWRKFF*ITWTECWTKVS 613
+T D +V+ W K + W C ++S
Sbjct: 284 RTPDRYVMPSWIKMLFLQWLPCLLRMS 310
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = -2
Query: 693 KTQDTFVVWCWRKFF*ITWTECWTKVS 613
+T D +V+ W K + W C ++S
Sbjct: 284 RTPDRYVMPSWIKMLFLQWLPCLLRMS 310
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = -2
Query: 693 KTQDTFVVWCWRKFF*ITWTECWTKVS 613
+T D +V+ W K + W C ++S
Sbjct: 284 RTPDRYVMPSWIKMLFLQWLPCLLRMS 310
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = -2
Query: 693 KTQDTFVVWCWRKFF*ITWTECWTKVS 613
+T D +V+ W K + W C ++S
Sbjct: 284 RTPDRYVMPSWIKMLFLQWLPCLLRMS 310
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = -2
Query: 693 KTQDTFVVWCWRKFF*ITWTECWTKVS 613
+T D +V+ W K + W C ++S
Sbjct: 284 RTPDRYVMPSWIKMLFLQWLPCLLRMS 310
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = -2
Query: 693 KTQDTFVVWCWRKFF*ITWTECWTKVS 613
+T D +V+ W K + W C ++S
Sbjct: 284 RTPDRYVMPSWIKMLFLQWLPCLLRMS 310
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 4.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = -2
Query: 693 KTQDTFVVWCWRKFF*ITWTECWTKVS 613
+T D +V+ W K + W C ++S
Sbjct: 352 RTPDRYVMPSWIKMLFLQWLPCLLRMS 378
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 4.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = -2
Query: 693 KTQDTFVVWCWRKFF*ITWTECWTKVS 613
+T D +V+ W K + W C ++S
Sbjct: 352 RTPDRYVMPSWIKMLFLQWLPCLLRMS 378
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 22.2 bits (45), Expect = 6.2
Identities = 5/22 (22%), Positives = 12/22 (54%)
Frame = -2
Query: 567 WSFILAFLDKCLRWNLSIECLV 502
W ++ LD+ W ++ C++
Sbjct: 539 WKYVAMVLDRIFLWIFTVACVL 560
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 22.2 bits (45), Expect = 6.2
Identities = 6/20 (30%), Positives = 10/20 (50%)
Frame = -2
Query: 567 WSFILAFLDKCLRWNLSIEC 508
W F+ LD+ W ++ C
Sbjct: 474 WKFVAMVLDRLFLWVFTLAC 493
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 473 GHTLYTLGCTTKHSIERF 526
GH +Y G K +IE+F
Sbjct: 25 GHLIYKCGGIDKRTIEKF 42
>AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein.
Length = 349
Score = 21.8 bits (44), Expect = 8.2
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1
Query: 403 TCSWKAGQPLCQ 368
T SWKAG +C+
Sbjct: 101 TVSWKAGDVMCR 112
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.8 bits (44), Expect = 8.2
Identities = 14/63 (22%), Positives = 25/63 (39%)
Frame = +1
Query: 484 LYPGLHHQALNRKIPPQALVQKSQDKRPHCAEEVLDYFHLFKNGHLGPTFCPRYSKKFSP 663
+Y L+H A NR+ PP + ++ E+ + + F P + +F
Sbjct: 1688 MYEELNHCAPNRRCPPPPRMGSAEGLSHRGMEDEICPYATFHLLGFREEMDPSKAMQFQT 1747
Query: 664 APH 672
PH
Sbjct: 1748 FPH 1750
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 473 GHTLYTLGCTTKHSIERF 526
GH +Y G K +IE+F
Sbjct: 25 GHLIYKCGGIDKRTIEKF 42
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,798
Number of Sequences: 438
Number of extensions: 6000
Number of successful extensions: 34
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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