Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_N21
         (850 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56590.1 68418.m07063 glycosyl hydrolase family 17 protein si...    31   0.97 
At4g29440.1 68417.m04203 expressed protein  contains Pfam profil...    31   0.97 

>At5g56590.1 68418.m07063 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 506

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 602 CSKMDTLVQHSVHVIQKNFLQHHTTNVSCVF 694
           C + DTLV H+  V    F Q+  T+V+C F
Sbjct: 405 CFQPDTLVSHASFVFNSYFQQNRATDVACSF 435


>At4g29440.1 68417.m04203 expressed protein  contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 1090

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +1

Query: 472 RPHTLYPGLHHQALNRKIPPQALVQKSQDKRPH---CAEEVLDYFH 600
           RP  L+ G+ H+ L  +IP +A   +SQD+R H    A     YFH
Sbjct: 785 RPTHLHSGVSHKDLEEEIPTRAST-RSQDRRTHKTTPASASASYFH 829


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,388,950
Number of Sequences: 28952
Number of extensions: 430827
Number of successful extensions: 950
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)