Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_N16
         (622 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P21301 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s...    33   7.3  
UniRef50_Q29CV2 Cluster: Mediator of RNA polymerase II transcrip...    32   9.6  

>UniRef50_P21301 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
           subunit homolog; n=3; Trypanosomatidae|Rep:
           NADH-ubiquinone oxidoreductase 49 kDa subunit homolog -
           Trypanosoma brucei brucei
          Length = 386

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -1

Query: 532 FDSISD*MLRAQ-M*WRDIRKFECYLNPIKFVYV*ILVVI-HSYNEIVFTQVSKRNSLLI 359
           F+S+S  + R+  M W D R F CY     F Y      I  +++ +       R SLLI
Sbjct: 216 FNSLSGVLSRSLGMVW-DCRLFSCYELYFMFCYDYCFCFIGDAFDRLFLRLFDMRMSLLI 274

Query: 358 C*SLAFVGFWV*G 320
           C    FVGF+V G
Sbjct: 275 CKQCFFVGFFVFG 287


>UniRef50_Q29CV2 Cluster: Mediator of RNA polymerase II transcription
            subunit 26; n=1; Drosophila pseudoobscura|Rep: Mediator
            of RNA polymerase II transcription subunit 26 -
            Drosophila pseudoobscura (Fruit fly)
          Length = 1585

 Score = 32.3 bits (70), Expect = 9.6
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 95   NTF*VTSSLLSSNTRNPINSISSGQRPNIQHTSTNI-QVF*VTGG 226
            N+   TS + +S TRN  N+ S   RPN+  +ST+I  ++ + GG
Sbjct: 1201 NSMSATSPINASETRNVKNAFSDSNRPNLLTSSTSIAPLYQIDGG 1245


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 581,815,295
Number of Sequences: 1657284
Number of extensions: 10947320
Number of successful extensions: 21136
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21131
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)