Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_N16
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    28   1.3  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    27   2.9  
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    25   8.8  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    25   8.8  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 466  CYLNPIKFVYV*ILVVIHSYNEIVFTQVSK 377
            CY +P+  + +  L  ++ YN++ +TQ S+
Sbjct: 1038 CYSSPMFMILIVPLFFLYRYNQVYYTQTSR 1067


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 378 RGIRCLSVKALLLSVFGYRDHFH*PLAPEVFLCIL 274
           +G+   SVK LLL +  Y D+ +   +   F+C+L
Sbjct: 839 KGVTPSSVKKLLLDLLCYNDNANNEFSDAYFICLL 873


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 166 PEAKHSAYQYQHPGVLSHRRFNCDLKN 246
           P+ +   Y YQ PG+   R +  D KN
Sbjct: 338 PKVREILYNYQRPGINPERVYCHDWKN 364


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/40 (20%), Positives = 23/40 (57%)
 Frame = +3

Query: 15  LWAIVFYIYIYSDGLQFYCKFQTQLKKILSESPQAYYHPI 134
           +W++  Y    +D L++  KF+ + + +  ++ + Y+ P+
Sbjct: 47  VWSVAVYAEAMADSLRYTSKFERKFEHVF-QALKKYWSPV 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,513
Number of Sequences: 5004
Number of extensions: 51249
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)