Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_N16
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0558 + 4521616-4522296                                           27   9.1  
02_01_0529 - 3846489-3847268                                           27   9.1  

>12_01_0558 + 4521616-4522296
          Length = 226

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 144 PLTASQVARGQTFSIPVPTSRCSKSQEVQL*PQKHSLSRSSLSKVYI 284
           P+T +  A G     P PT+ CS S    L P +  L  SS S + +
Sbjct: 4   PVTPASSAAGAPPPPPPPTTTCSTSCRFVLPPTRRHLLASSASSLLL 50


>02_01_0529 - 3846489-3847268
          Length = 259

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 20/74 (27%), Positives = 30/74 (40%)
 Frame = +3

Query: 111 PQAYYHPILGIPLTASQVARGQTFSIPVPTSRCSKSQEVQL*PQKHSLSRSSLSKVYIRI 290
           P A Y P   +P   + V  G   S P PT+    S + QL  Q+       L +   + 
Sbjct: 24  PAAAYPPQAMVPGAPAVVPPGSQPSAPFPTNPAQLSAQHQLVYQQAQQFHQQLQQQQQQQ 83

Query: 291 LQELMVNESDPYTQ 332
           L+E   N+ +   Q
Sbjct: 84  LREFWANQMEEIEQ 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,014,835
Number of Sequences: 37544
Number of extensions: 281521
Number of successful extensions: 445
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)