Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_N15
(535 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont... 139 9e-34
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ... 136 9e-33
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont... 131 3e-31
At4g02510.1 68417.m00343 chloroplast outer membrane protein, put... 28 3.4
At1g01010.1 68414.m00001 no apical meristem (NAM) family protein... 28 3.4
At5g36210.1 68418.m04365 expressed protein 27 5.9
At5g34930.1 68418.m04119 arogenate dehydrogenase identical to ar... 27 7.9
>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
contains similarity to 40S ribosomal protein S10
Length = 180
Score = 139 bits (337), Expect = 9e-34
Identities = 70/136 (51%), Positives = 91/136 (66%), Gaps = 6/136 (4%)
Frame = -2
Query: 486 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 307
M++ + NR I +YLFKEGV+ AKKD++ P+H +E +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60
Query: 306 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVG-RPDAPARS---- 142
AW H+YW+LTNEGI++LR +L+LP EIVPATLK+ + G G RP P R
Sbjct: 61 AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRPRGPPRGDGER 120
Query: 141 -AEDRSAYRRTPAAPG 97
DR YR P + G
Sbjct: 121 RFGDRDGYRGGPKSGG 136
>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
Length = 177
Score = 136 bits (329), Expect = 9e-33
Identities = 67/124 (54%), Positives = 88/124 (70%), Gaps = 2/124 (1%)
Frame = -2
Query: 486 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 307
M++ + NR I +YLFKEGV AKKD++ PKH ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 306 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSAED 133
AW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S + GP G R P RS D
Sbjct: 60 AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGD 119
Query: 132 RSAY 121
R +
Sbjct: 120 RPRF 123
>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
contains similarity to 40S ribosomal protein S10
Length = 179
Score = 131 bits (316), Expect = 3e-31
Identities = 78/171 (45%), Positives = 99/171 (57%), Gaps = 16/171 (9%)
Frame = -2
Query: 486 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 307
M++ + NR I +YLFKEGV AKKD++ KH ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 306 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSA-- 139
AW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S + GP G R P
Sbjct: 60 AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGD 119
Query: 138 ----EDRSAYRRTPAA-------PGVAPHDKKADV-GPGSADLESKGGYGA 22
DR YR P A G AP D + G G GGY A
Sbjct: 120 RPRFGDRDGYRAGPRAGGEFGGEKGGAPADYQPSFQGSGRGFGRGAGGYSA 170
>At4g02510.1 68417.m00343 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 1503
Score = 28.3 bits (60), Expect = 3.4
Identities = 23/70 (32%), Positives = 35/70 (50%)
Frame = +2
Query: 38 LDSRSAEPGPTSAFLS*GATPGAAGVRLYADLSSAERAGASGRPTGPRRTVSVRTERLSV 217
+DS+S P PT+ F A+ G +G + YA + +A A A+ + G VS E S
Sbjct: 1 MDSKSVTPEPTNPFY---ASSGQSG-KTYASVVAAAAAAAADKEDG--GAVSSAKELDSS 54
Query: 218 AGTISGGRCK 247
+ +SG K
Sbjct: 55 SEAVSGNSDK 64
>At1g01010.1 68414.m00001 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to NAC domain protein NAM GB: AAD17313
GI:4325282 from [Arabidopsis thaliana]
Length = 429
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -2
Query: 399 PKHTELEKIPNLQVIKAMQSLKSRGYVKEQ 310
P HT ++ IP+L +I+ + + K++ K+Q
Sbjct: 333 PGHTRIDDIPSLNIIEPLHNYKAQEQPKQQ 362
>At5g36210.1 68418.m04365 expressed protein
Length = 676
Score = 27.5 bits (58), Expect = 5.9
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -2
Query: 489 KMLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKH 391
K++ P Q+R IYE L K+G+ VA +Y +H
Sbjct: 603 KVVTPDQSR-KIYEALKKKGLPVALVEYEGEQH 634
>At5g34930.1 68418.m04119 arogenate dehydrogenase identical to
arogenate dehydrogenase GI:16903098 from [Arabidopsis
thaliana]; contains Pfam profile: PF02153: prephenate
dehydrogenase
Length = 640
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 394 LRCMIVFFGHHDSLFKEVLINSNTVLFGH 480
LR I+ FG++ E LI+ +LF H
Sbjct: 53 LRIAIIGFGNYGQFLAETLISQGHILFAH 81
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,142,502
Number of Sequences: 28952
Number of extensions: 217857
Number of successful extensions: 610
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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