Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_N14
         (802 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               262   2e-70
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         122   4e-28
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)               97   1e-20
SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_58923| Best HMM Match : RVT_1 (HMM E-Value=0.022)                   30   1.9  
SB_29472| Best HMM Match : DUF964 (HMM E-Value=4.7)                    30   2.5  
SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_57037| Best HMM Match : RVT_1 (HMM E-Value=3.4e-15)                 29   5.8  
SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16)                 29   5.8  
SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03)                    29   5.8  
SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)                 29   5.8  
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)                 29   5.8  
SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36)                   29   5.8  
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_23276| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   5.8  
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   7.7  
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  262 bits (642), Expect = 2e-70
 Identities = 123/166 (74%), Positives = 135/166 (81%), Gaps = 1/166 (0%)
 Frame = -3

Query: 800 MIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGT-IEDKVKWAREHLEKPIPVDSVF 624
           M +YC V+RVI HTQ KLLK RQKKAHIMEIQ+NGG  + +KV W RE LE P PV  VF
Sbjct: 152 MKKYCKVIRVICHTQQKLLKMRQKKAHIMEIQVNGGKDVAEKVDWCRERLENPAPVRKVF 211

Query: 623 AQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQ 444
           + DEMID I           T RW TKKLPRKTHKGLRKVACIGAWHP+RVSF+VARAGQ
Sbjct: 212 SPDEMIDVIGVTKGHGFKGVTYRWGTKKLPRKTHKGLRKVACIGAWHPARVSFSVARAGQ 271

Query: 443 KGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 306
            GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSI+PM
Sbjct: 272 AGYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSISPM 317


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  122 bits (293), Expect = 4e-28
 Identities = 57/86 (66%), Positives = 66/86 (76%)
 Frame = -3

Query: 305 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHG 126
           GGFPHYG+VN DF+M+KGC +GPKKR++TLRKSL VHT R A EKI LKFIDTSSKFGHG
Sbjct: 215 GGFPHYGQVNEDFLMVKGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSSKFGHG 274

Query: 125 RFQTPAXQGCITWGHYKKEXMREEAA 48
           RFQ PA +     G  K +  +E AA
Sbjct: 275 RFQHPAEKRAF-MGMLKSDREKELAA 299


>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 42/45 (93%), Positives = 45/45 (100%)
 Frame = -3

Query: 440 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 306
           GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSITPM
Sbjct: 2   GYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSITPM 46


>SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 397 LDKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 296
           LDK     MA  +   HLLS+T  RNP LH++E++
Sbjct: 247 LDKRFQDEMAFNVSKCHLLSVTNKRNPSLHEYEIN 281


>SB_58923| Best HMM Match : RVT_1 (HMM E-Value=0.022)
          Length = 270

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 194 TKRAALEKINLKFIDTSSKFGHGRFQTPAXQGCITWGHYKKE 69
           +KR  L K   KF+   + F H   Q     G I WG  KK+
Sbjct: 215 SKRLGLLKRTKKFLSARTLFYHSLIQPILDYGAIVWGSTKKQ 256


>SB_29472| Best HMM Match : DUF964 (HMM E-Value=4.7)
          Length = 344

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +3

Query: 72  LLVVSPCNAALXSRRLESTMTELGRGVNEFEVDLF*CSPLCMHTQRLSKSNDTLFRSHAA 251
           +++  PCN         ST  E G G++E E+ LF  S L      LS S+     +   
Sbjct: 232 IIITPPCNEETKETEELSTKPEQGEGLSEDELALFHNSLLLKTNSYLSLSSSMPDLAKIG 291

Query: 252 TLDHHKVV 275
            +D ++V+
Sbjct: 292 FMDFNEVI 299


>SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 380 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 255
           KK   V +N+  T  D    +   + GFPHY  + +D + IK
Sbjct: 44  KKCWTVTQNDVPTPLDCGLSAWRILSGFPHYKLIEDDHIEIK 85


>SB_57037| Best HMM Match : RVT_1 (HMM E-Value=3.4e-15)
          Length = 291

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 394 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 296
           D   T +MA  +   HLLS+T  RNP LH++E++
Sbjct: 173 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 206


>SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16)
          Length = 453

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 394 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 296
           D   T +MA  +   HLLS+T  RNP LH++E++
Sbjct: 204 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 237


>SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03)
          Length = 347

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 394 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 296
           D   T +MA  +   HLLS+T  RNP LH++E++
Sbjct: 275 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 308


>SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 394 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 296
           D   T +MA  +   HLLS+T  RNP LH++E++
Sbjct: 59  DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 92


>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
          Length = 1683

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 394  DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 296
            D   T +MA  +   HLLS+T  RNP LH++E++
Sbjct: 1091 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1124



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 394  DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 296
            D   T +MA  +   HLLS+T  RNP LH++E++
Sbjct: 1283 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1316


>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
          Length = 892

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 394 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 296
           D   T +MA  +   HLLS+T  RNP LH++E++
Sbjct: 643 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 676


>SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36)
          Length = 1022

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 394 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 296
           D   T +MA  +   HLLS+T  RNP LH++E++
Sbjct: 832 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 865


>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1676

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 394 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 296
           D   T +MA  +   HLLS+T  RNP LH++E++
Sbjct: 895 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 928


>SB_23276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 394 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 296
           D   T +MA  +   HLLS+T  RNP LH++E++
Sbjct: 75  DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 108


>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1176

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 394  DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 296
            D   T +MA  +   HLLS+T  RNP LH++E++
Sbjct: 979  DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1012


>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1918

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -2

Query: 765 PHSNEAVKTATKEGSHYGNPT*RWYHRGQSEMGQ-RTSGETYP 640
           PH N +  T    G H  NPT    HR  S  GQ R +G   P
Sbjct: 282 PHQNGSNVTNIPVGGHPSNPTPAAIHRSMSVGGQPRVNGPGNP 324


>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -3

Query: 236 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPA 108
           K R++  +K  ++H+  +   K  ++F+   SKF H    T A
Sbjct: 317 KDRLLEWKKERQIHSFSSTTLKARIRFVAAMSKFAHTTEDTTA 359


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,313,213
Number of Sequences: 59808
Number of extensions: 569621
Number of successful extensions: 1237
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)