Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_N13
         (409 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8T0X1 Cluster: 18 wheeler precursor; n=1; Bombyx mori|...    34   0.96 
UniRef50_Q7QPD4 Cluster: GLP_89_8425_10077; n=1; Giardia lamblia...    32   5.1  

>UniRef50_Q8T0X1 Cluster: 18 wheeler precursor; n=1; Bombyx mori|Rep:
            18 wheeler precursor - Bombyx mori (Silk moth)
          Length = 1295

 Score = 34.3 bits (75), Expect = 0.96
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 409  PSSXRHGHKLKRLNYGRNSNTYTMDASVLNSTCQTL 302
            P S    HK +  +Y R+ NTYT+D+SV N   +T+
Sbjct: 1164 PDSTHSSHKSRSHSYRRSINTYTLDSSVPNGGNRTM 1199


>UniRef50_Q7QPD4 Cluster: GLP_89_8425_10077; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_89_8425_10077 - Giardia lamblia ATCC
           50803
          Length = 550

 Score = 31.9 bits (69), Expect = 5.1
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 219 SESIVEYMCSDRGRSQGERSAEFADFPQSVWHVLFNTD 332
           S+ + E+  SDR R + ER A  AD  ++V ++LF  D
Sbjct: 448 SKFMAEFQRSDRRREEDERLAFRADIKEAVQYILFTVD 485


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 323,863,923
Number of Sequences: 1657284
Number of extensions: 5256599
Number of successful extensions: 11830
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11829
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18196175969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)