Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_N13
         (409 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    23   0.87 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   2.7  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   6.1  

>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 0.87
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 388 HKLKRLNYGRNSNTYTMDASVLNSTCQTLCGKS 290
           HK+  L+ G+N  TY  D   L+     LC ++
Sbjct: 189 HKIV-LDMGKNCVTYVFDLFYLSKRASDLCNEA 220


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 179 AVCGFPTYCSNVPGI 135
           ++CG   +C N+PG+
Sbjct: 36  SICGEHGHCVNLPGV 50


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = -1

Query: 385 KLKRLNYGRNSNTYTMDASVLNSTCQTLC 299
           K K + Y         ++++L S C  LC
Sbjct: 171 KYKTVTYVMTGQLKAQNSNLLKSVCADLC 199


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,080
Number of Sequences: 336
Number of extensions: 1402
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)