Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_N13
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    24   1.5  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    25   3.4  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   6.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   7.9  

>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 23.8 bits (49), Expect(2) = 1.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 377 KT*LRKKF*YVHNGRVGVKQYVPDALRKVCKFCR 276
           KT + K F ++H    GV+    D   K+ + CR
Sbjct: 564 KTVVNKLFEFMHEYHEGVQDMACDTFIKIAQKCR 597



 Score = 21.0 bits (42), Expect(2) = 1.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 254 PIRTHIFYNRFGLLVNRFPR 195
           P +TH FY   G +++  P+
Sbjct: 628 PQQTHTFYEACGYMISAQPQ 647


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 355 SNTYTMDASVLNSTCQTLCGKSANSAERSPC 263
           ++ Y M    ++  C TLC K A +A R+PC
Sbjct: 268 NDVYKMQPPNISLAC-TLCKKLARNACRTPC 297


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 177 SLWFSNILFKRTWYKHLNKH*PKRSLD 97
           +L+F +   KR W K+LN    K S+D
Sbjct: 854 ALYFRDAYIKRLWEKYLNTVDDKDSVD 880


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 346 YTMDASVLNSTCQTLCGKSANSA 278
           Y +  S+LNS C  LC  S++ A
Sbjct: 185 YDLPFSILNSPCSDLCLNSSSLA 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,338,187
Number of Sequences: 5004
Number of extensions: 21954
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)