Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_N13
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1091 - 10015180-10015236,10015705-10015779,10015874-100161...    28   2.5  
06_01_0303 + 2194345-2194414,2195228-2195328,2195818-2196657,219...    28   3.3  
11_03_0128 - 10437407-10438049,10438097-10438272                       27   4.3  
10_01_0202 + 2178297-2178406,2180725-2180980,2181838-2181912,218...    27   4.3  
05_02_0022 + 5682045-5682301,5682477-5682720                           27   5.7  
02_01_0030 - 183836-183903,183986-184453,184526-184604,184698-18...    27   5.7  

>07_01_1091 -
           10015180-10015236,10015705-10015779,10015874-10016149,
           10016204-10016332,10017070-10017171,10017626-10017688,
           10017776-10017856,10018218-10018314,10019064-10019236,
           10019327-10019434,10019706-10019789,10019985-10020047,
           10020483-10020569
          Length = 464

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 317 YVPDALRKVCKFCRAFAL*SPPI 249
           Y+PD +RKV K  RA A+ S PI
Sbjct: 282 YIPDKVRKVGKVFRAIAIMSHPI 304


>06_01_0303 +
           2194345-2194414,2195228-2195328,2195818-2196657,
           2196743-2196889,2196985-2197365
          Length = 512

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 243 CSDRGRSQGERSAEFADFPQSVWHVL 320
           C   G SQG    E  D P+ +W ++
Sbjct: 38  CQQDGDSQGAADIEIPDLPEDIWRLI 63


>11_03_0128 - 10437407-10438049,10438097-10438272
          Length = 272

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 391 GHKLKRLNYGRNSNTYTMDASVLNSTCQTLCGKSANSAERSPC 263
           GH+ ++ +  R S +    AS  ++TC+T C  + NS   SPC
Sbjct: 120 GHRARQRHLPRRSRS---TASTSSTTCRTCCRATPNST--SPC 157


>10_01_0202 +
           2178297-2178406,2180725-2180980,2181838-2181912,
           2182386-2182436,2182598-2182724,2182806-2182952,
           2183846-2183976,2184088-2184189,2184604-2184702,
           2185117-2185182,2185218-2185448
          Length = 464

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 192 RPWKSVDE*SESIVEYMCSDRGRSQGERSAEFADFPQSVWHVLFNTDASIVYVLEFL 362
           R W+ VD+  E +V   C D+   +      F D   S+ H LF    S +   E L
Sbjct: 78  RRWEGVDQALERMVLRACLDQAPERRRVRDAFKDVQLSIDHCLFKGQYSDIGTKEVL 134


>05_02_0022 + 5682045-5682301,5682477-5682720
          Length = 166

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 260 SPPIRTHIFYNRFGLLVNRFPRPT 189
           SPP+ T +F    GLL +R PRPT
Sbjct: 33  SPPLLTFLF--PIGLLPDRLPRPT 54


>02_01_0030 -
           183836-183903,183986-184453,184526-184604,184698-185183
          Length = 366

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 291 DFPQSVWHVLFNTDASIVY 347
           D P   WH++F+TD  I Y
Sbjct: 104 DAPGETWHMVFSTDGEIPY 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,514,457
Number of Sequences: 37544
Number of extensions: 141659
Number of successful extensions: 311
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)