Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_N13
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.44 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   4.1  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    20   9.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 0.44
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = -1

Query: 385  KLKRLNYGRNSNTYTMD--ASVLNSTCQTLCGKSANSA---ERSPCDRPLSEH 242
            K   L Y RN NTYT+D   SV  +   TL G+    +   + SP    + +H
Sbjct: 1215 KSSPLVYKRNINTYTLDGVGSVEKTGVSTLRGQERQRSLFKDSSPATALMLQH 1267


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 267 PVIAPYPN 244
           P+IAPYPN
Sbjct: 101 PLIAPYPN 108


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 315 RARRSAESLQILQSVRPVIAPYP 247
           R RR AES     + RPV  P P
Sbjct: 87  RLRREAESEAEPGNNRPVYIPQP 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,514
Number of Sequences: 438
Number of extensions: 1821
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)