Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_N13
         (409 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23090.1 68417.m03328 hypothetical protein                          30   0.69 
At1g73620.1 68414.m08523 thaumatin-like protein, putative / path...    27   4.8  

>At4g23090.1 68417.m03328 hypothetical protein 
          Length = 179

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 198 WKSVDE*SESIVEYMCSDRGRSQGERSAEFADFPQSVWHVLFNTDASIVYVLEFL 362
           WK++ E S   V+   ++ G  QGE+  +  + P     VL      IV VL ++
Sbjct: 22  WKNMSENSSITVDQPTTENGNGQGEQVIQLGNMPPPRKDVLNLDQQEIVSVLAYI 76


>At1g73620.1 68414.m08523 thaumatin-like protein, putative /
           pathogenesis-related protein, putative strong similarity
           to SP|P50699 Thaumatin-like protein precursor
           {Arabidopsis thaliana}, pathogenesis-related group 5
           protein [Brassica rapa] GI:2749943; contains Pfam
           profile: PF00314 thaumatin family
          Length = 264

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -3

Query: 278 RAFAL*SPPIRTHIFYNRFGLLVNRFPRPTQSAAVCGFPTYCSNVPGI 135
           RA+ L  PP+ +  F+ R G   +R  R   +   CG    C+   G+
Sbjct: 78  RAYTLQLPPLWSGRFWGRHGCSFDRSGRGRCATGDCGGSFLCNGAGGV 125


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,910,009
Number of Sequences: 28952
Number of extensions: 115899
Number of successful extensions: 253
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)