Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_N06
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 26 3.1
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po... 26 4.1
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 25 5.4
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 5.4
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 25 7.2
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 25 7.2
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 25 7.2
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch... 25 7.2
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 25 9.5
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 25 9.5
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 356 QFFARKLNARHVKHPGHGFKG 294
QF RKL H KH HG G
Sbjct: 213 QFIFRKLGLHHGKHGHHGHSG 233
>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 276 MLGPKPAFEAMSWMFDMPCIKLAGEKLLAFIGNMFGSLGTAAPSN 410
+LGP ++A P IK K++ F ++ GS+G PS+
Sbjct: 115 VLGPIHVYQAF-----YPLIKKGRSKIIVFTSSLAGSMGAFFPSS 154
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/24 (41%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +3
Query: 159 ICCFHLLKSMVDIFPFSLI-SSFV 227
+ CFHL+ + + +FP+++I +SFV
Sbjct: 44 LLCFHLVPNALFLFPWTIITTSFV 67
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +3
Query: 120 IS*CIRYFF*IKLICCFHLLKSMVDIFPFSLISSFVIFFPALSTTVEMAAPFMLGPKPAF 299
+S R F ++++ +L ++ +F +LIS F F A + + PF L K F
Sbjct: 1041 LSRAFRAFKALRVLRLINLTQTSQRMFHDALISGFFKIFSAAVVSATLLIPFALWAKNVF 1100
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = +3
Query: 189 VDIFPFSLISSFVIFFPALSTTVEMAAPFMLGPKPAFEAMSW 314
V F F LIS+ I+FP A L P A + W
Sbjct: 186 VGFFIFWLISNVAIWFPVYQIRHLFTAKSFLAPPAAIAFLIW 227
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -1
Query: 451 KVAIILLILAAVYGLEGAAVPNDPNIFPINANSFSPASLMQGMSNIQDMAS 299
++AI ++ + GL P+DPN+ + S SP L +NI+ + S
Sbjct: 307 RIAIFYVVSLILIGL--LISPDDPNLMGNGSTSVSPFVLAIKEANIKGLPS 355
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 445 AIILLILAAVYGLEGAAVPNDPNIFPINAN 356
A +L I AV G + N PNIFPI N
Sbjct: 361 AALLSIGVAVEGSSESVAGNLPNIFPIIIN 390
>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
Mud1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 400 AAVPNDPNIFPINANSFSPASLMQGMSNIQDM 305
AAV NDPN F S + + L+Q S+ M
Sbjct: 31 AAVLNDPNAFATTWQSINASQLLQIPSSTYSM 62
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = -1
Query: 400 AAVPNDPNIFPINANSFSPASLMQGMS--NIQDMASKAGFG-PNMNG 269
AA P DPN++ +N N S N + A GF N+NG
Sbjct: 273 AAFPFDPNVYALNTNDGPVTSTDNNCDQLNTRMQAWNNGFNYSNLNG 319
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +3
Query: 456 IV*VYLRMFKNNYYAYFSCKLFSST 530
+V ++ + NNYY Y++ ++F T
Sbjct: 271 LVMLFRELIGNNYYFYYATQVFKGT 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,006,509
Number of Sequences: 5004
Number of extensions: 36678
Number of successful extensions: 106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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