Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_N06
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0338 + 24509698-24510042,24510373-24510490,24510539-245106...    29   3.1  
07_01_0026 + 190568-190829,192475-194534,194620-195168                 28   4.1  
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527...    28   5.5  
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482...    28   5.5  
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050     27   9.6  
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    27   9.6  
01_05_0773 + 25062364-25062894,25063000-25063244,25063365-250637...    27   9.6  

>04_04_0338 +
           24509698-24510042,24510373-24510490,24510539-24510642,
           24510823-24511491
          Length = 411

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 306 MSWMFDMPCIKLAGEKLLAFIGNMFGSLGTAA 401
           ++W     C+  A   LL F G+M G +G A+
Sbjct: 315 LAWRTAFVCVTTAASTLLPFFGSMVGLIGAAS 346


>07_01_0026 + 190568-190829,192475-194534,194620-195168
          Length = 956

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
 Frame = -1

Query: 466 TYTMTKVAIILLILAAVYGLEGAAVPNDPNIFPINANSFSPASLMQGM----SNIQDMAS 299
           T ++T +  +  +   + GL+G    +DP  F +   SF+ + LMQ +    S ++++A 
Sbjct: 671 TASLTSILTVQQLSTGIQGLDGLIASSDPIGFQV--GSFAKSYLMQELGVPESRLRELAI 728

Query: 298 KAGFGPNMNGAAISTVVDSAGKKMTKLLISENGKISTM 185
              +  ++    ++ +VD       +L +S N +  T+
Sbjct: 729 -TDYASSLQTGVVAAIVDEL--PYVELFLSTNCQFRTV 763


>04_03_0747 -
           19251617-19251781,19252377-19252502,19252606-19252716,
           19252931-19253679,19254034-19254167,19254595-19254740,
           19255166-19255336,19255977-19256828
          Length = 817

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = +3

Query: 333 IKLAGE--KLLAFIGNMFGSLGTAAPSNPYTAAKIKRIIATFVIV*VYLRMFKNNYYAYF 506
           I L GE  K   +I NM    G    + PY   KIK +I T V    Y +  + + Y Y 
Sbjct: 649 ISLCGENEKPFTYIFNMLADWGVQQDTVPYIQGKIKGLI-TSVKRFQYKQSMQYDLYVYI 707

Query: 507 SCKLFSSTQFI 539
               F +  F+
Sbjct: 708 DDGSFITEAFV 718


>03_01_0658 +
           4818401-4818540,4818605-4819201,4819694-4819949,
           4820038-4820723,4821009-4821147,4821378-4821514,
           4821805-4822077,4822175-4822382,4822660-4822731,
           4823230-4823460,4824269-4824532,4825127-4825268,
           4825355-4825467
          Length = 1085

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 7/28 (25%), Positives = 21/28 (75%)
 Frame = +1

Query: 394 RPHLLTRTRQPKSKE*LQPSSLYKFICV 477
           RP+   ++++P++ +   PS+++K++C+
Sbjct: 3   RPNTRNKSKRPRADDCESPSAVFKYVCI 30


>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
          Length = 478

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -1

Query: 418 VYGLEGAAVPNDPNIFPINANSFSPASLMQGMSNIQDMASKAGFGPNMNGA-AISTVVDS 242
           V  L+   +   P+IF + AN+++   L +   N+  +    G  PN+     +     +
Sbjct: 354 VAALKAENLQLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIEPNLVMLNLLINAFGT 413

Query: 241 AGKKMTKLLISENGKISTM 185
           AG+ +  L + ++ K S M
Sbjct: 414 AGRHLEALAVLQHIKDSGM 432


>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +3

Query: 27   FLSASQSNLHHLLKLSXVIKSVGRLFXIXXQIS*CIRYFF*IKLICCFHLLKSMVD 194
            FL  S   L+H L+   +++ +G       ++   +RY   +K+ C  HL  +M+D
Sbjct: 996  FLEGSSPILNHALR---IVEVLGAYRLSSSELRLLVRYILQLKVKCSGHLFVNMMD 1048


>01_05_0773 +
           25062364-25062894,25063000-25063244,25063365-25063749,
           25063857-25064282
          Length = 528

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = -1

Query: 466 TYTMTKVAIILLILAAVYGLEGAAVPNDPNIFPINANSFSPASLMQGMS 320
           TY   ++  +      +  L    + +DPNI+  +A+ F P   ++G+S
Sbjct: 409 TYKQMEIGGVTYPAGVIVELPVLLIHHDPNIWGSDAHEFKPDRFVEGIS 457


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,207,803
Number of Sequences: 37544
Number of extensions: 218284
Number of successful extensions: 495
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)